Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N149_RS07815 Genome accession   NC_022660
Coordinates   1558650..1560155 (-) Length   501 a.a.
NCBI ID   WP_023362239.1    Uniprot ID   -
Organism   Campylobacter coli 15-537360     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553650..1565155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS07785 (N149_1523) - 1553893..1554633 (-) 741 WP_002778542.1 TerC family protein -
  N149_RS07790 (N149_1522) - 1554774..1555490 (+) 717 WP_023362241.1 ankyrin repeat domain-containing protein -
  N149_RS07795 (N149_01945) - 1555656..1555892 (+) 237 WP_002778540.1 hypothetical protein -
  N149_RS07800 (N149_1520) purN 1556030..1556605 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  N149_RS07805 (N149_1519) - 1556596..1557966 (-) 1371 WP_002801372.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  N149_RS07810 (N149_1518) - 1557950..1558648 (-) 699 WP_002778537.1 NYN domain-containing protein -
  N149_RS07815 (N149_1517) comM 1558650..1560155 (-) 1506 WP_023362239.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N149_RS07820 (N149_1516) def 1560152..1560679 (-) 528 WP_002778535.1 peptide deformylase -
  N149_RS07825 (N149_1515) clpP 1560707..1561291 (-) 585 WP_002831473.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  N149_RS07830 (N149_1514) tig 1561291..1562616 (-) 1326 WP_023362237.1 trigger factor -
  N149_RS07835 (N149_1513) folE 1562737..1563309 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  N149_RS07840 (N149_1512) fliI 1563309..1564694 (+) 1386 WP_002831479.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56622.66 Da        Isoelectric Point: 8.7459

>NTDB_id=52474 N149_RS07815 WP_023362239.1 1558650..1560155(-) (comM) [Campylobacter coli 15-537360]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVLPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=52474 N149_RS07815 WP_023362239.1 1558650..1560155(-) (comM) [Campylobacter coli 15-537360]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTACTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.273

99.601

0.361

Multiple sequence alignment