Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K5O18_RS10380 Genome accession   NZ_CP081939
Coordinates   2080450..2081169 (+) Length   239 a.a.
NCBI ID   WP_110480073.1    Uniprot ID   A0AAE5WGH3
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075450..2086169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS10345 (K5O18_10345) tolR 2075933..2076355 (+) 423 WP_110480065.1 colicin uptake protein TolR -
  K5O18_RS10350 (K5O18_10350) tolA 2076372..2077586 (+) 1215 WP_110480067.1 cell envelope integrity protein TolA -
  K5O18_RS10355 (K5O18_10355) tolB 2077638..2078927 (+) 1290 WP_226537711.1 Tol-Pal system beta propeller repeat protein TolB -
  K5O18_RS10360 (K5O18_10360) pal 2078938..2079390 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  K5O18_RS10375 (K5O18_10375) comN 2079928..2080449 (+) 522 WP_110480071.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K5O18_RS10380 (K5O18_10380) comO 2080450..2081169 (+) 720 WP_110480073.1 type II secretion system protein J Machinery gene
  K5O18_RS10385 (K5O18_10385) - 2081171..2081836 (+) 666 WP_110480075.1 DUF2572 family protein -
  K5O18_RS10390 (K5O18_10390) comQ 2081817..2082122 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  K5O18_RS10395 (K5O18_10395) recC 2082134..2085538 (+) 3405 WP_110480077.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27810.09 Da        Isoelectric Point: 7.9552

>NTDB_id=524724 K5O18_RS10380 WP_110480073.1 2080450..2081169(+) (comO) [Avibacterium paragallinarum strain p4chr1]
MYHRHIKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQVSGEPLGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=524724 K5O18_RS10380 WP_110480073.1 2080450..2081169(+) (comO) [Avibacterium paragallinarum strain p4chr1]
ATGTATCATCGCCATATAAAAGGACAGAGCTTATTATCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAACTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGTTTCAGGGGAGCCACTGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5WGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.115

87.029

0.41