Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K5O18_RS00460 Genome accession   NZ_CP081939
Coordinates   92624..93391 (+) Length   255 a.a.
NCBI ID   WP_035688099.1    Uniprot ID   A0A0F5EV19
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87624..98391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS00450 (K5O18_00450) - 88990..89649 (-) 660 WP_222593714.1 IS1595 family transposase -
  K5O18_RS00455 (K5O18_00455) - 89916..92465 (-) 2550 WP_110479407.1 penicillin-binding protein 1A -
  K5O18_RS00460 (K5O18_00460) comA 92624..93391 (+) 768 WP_035688099.1 hypothetical protein Machinery gene
  K5O18_RS00465 (K5O18_00465) - 93421..93933 (+) 513 WP_046097217.1 PilN domain-containing protein -
  K5O18_RS00470 (K5O18_00470) - 93926..94447 (+) 522 WP_133247367.1 hypothetical protein -
  K5O18_RS00475 (K5O18_00475) - 94447..94806 (+) 360 WP_017806828.1 hypothetical protein -
  K5O18_RS00480 (K5O18_00480) comE 94815..96137 (+) 1323 WP_035688106.1 type IV pilus secretin PilQ Machinery gene
  K5O18_RS00485 (K5O18_00485) aroK 96371..96898 (+) 528 WP_035688108.1 shikimate kinase AroK -
  K5O18_RS00490 (K5O18_00490) aroB 96915..98003 (+) 1089 WP_110479404.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30475.31 Da        Isoelectric Point: 7.8120

>NTDB_id=524688 K5O18_RS00460 WP_035688099.1 92624..93391(+) (comA) [Avibacterium paragallinarum strain p4chr1]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENRPRFCVIENDISFERLKPNLLVGECNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
NTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=524688 K5O18_RS00460 WP_035688099.1 92624..93391(+) (comA) [Avibacterium paragallinarum strain p4chr1]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATCGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGAATGTAATTATTCATTAAAAACTTTGAAATTTGTGGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGCGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCC
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCGCTGTTTTTTTATCAAGATGAAGTCTATGTATTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGCT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
AATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EV19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

38.306

97.255

0.373
  comA Haemophilus influenzae Rd KW20

38.306

97.255

0.373