Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JHX84_RS18460 Genome accession   NZ_CP067043
Coordinates   3747062..3747526 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain 19573-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3742062..3752526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS19995 - 3742575..3743120 (-) 546 Protein_3602 hypothetical protein -
  JHX84_RS18440 (JHX84_18435) fadH 3743231..3743995 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  JHX84_RS18445 (JHX84_18440) - 3744139..3745002 (+) 864 WP_069473382.1 metallophosphoesterase -
  JHX84_RS18450 (JHX84_18445) - 3745077..3745571 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  JHX84_RS18455 (JHX84_18450) - 3745647..3746939 (+) 1293 WP_069473381.1 MFS transporter -
  JHX84_RS18460 (JHX84_18455) kre 3747062..3747526 (+) 465 WP_003154622.1 YkyB family protein Regulator
  JHX84_RS18465 (JHX84_18460) cheV 3747569..3748480 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  JHX84_RS18470 (JHX84_18465) - 3748669..3748830 (+) 162 WP_007409608.1 hypothetical protein -
  JHX84_RS18475 (JHX84_18470) - 3749031..3750250 (+) 1220 Protein_3610 aminotransferase A -
  JHX84_RS18480 (JHX84_18475) - 3750226..3752046 (-) 1821 WP_161503453.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=524670 JHX84_RS18460 WP_003154622.1 3747062..3747526(+) (kre) [Bacillus velezensis strain 19573-3]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=524670 JHX84_RS18460 WP_003154622.1 3747062..3747526(+) (kre) [Bacillus velezensis strain 19573-3]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929