Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JHX84_RS04025 Genome accession   NZ_CP067043
Coordinates   801408..801845 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 19573-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 796408..806845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS04010 (JHX84_04010) - 799266..799628 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  JHX84_RS04015 (JHX84_04015) hxlA 799860..800495 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  JHX84_RS04020 (JHX84_04020) hxlB 800492..801049 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  JHX84_RS04025 (JHX84_04025) nucA/comI 801408..801845 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JHX84_RS04030 (JHX84_04030) nin/comJ 801867..802265 (+) 399 WP_043866822.1 competence protein ComJ Regulator
  JHX84_RS04035 (JHX84_04035) - 802306..802525 (-) 220 Protein_783 family 1 glycosylhydrolase -
  JHX84_RS20095 - 802524..802802 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  JHX84_RS04045 (JHX84_04045) - 802744..803019 (-) 276 WP_371745793.1 YckD family protein -
  JHX84_RS04050 (JHX84_04050) - 803136..803570 (-) 435 WP_003156592.1 RDD family protein -
  JHX84_RS04055 (JHX84_04055) - 803585..804721 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  JHX84_RS04060 (JHX84_04060) - 804786..805988 (-) 1203 WP_069473143.1 GTP-binding protein -
  JHX84_RS19855 - 806102..806266 (+) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=524617 JHX84_RS04025 WP_003156588.1 801408..801845(+) (nucA/comI) [Bacillus velezensis strain 19573-3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=524617 JHX84_RS04025 WP_003156588.1 801408..801845(+) (nucA/comI) [Bacillus velezensis strain 19573-3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641