Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JGS08_RS08920 Genome accession   NZ_CP067022
Coordinates   1939442..1940158 (+) Length   238 a.a.
NCBI ID   WP_080394009.1    Uniprot ID   -
Organism   Pseudomonas cannabina pv. alisalensis strain MAFF 301419     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934442..1945158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGS08_RS08910 (JGS08_08910) - 1934928..1936955 (-) 2028 WP_054080089.1 type VI secretion system tip protein VgrG -
  JGS08_RS08915 (JGS08_08915) comA 1937183..1939399 (+) 2217 WP_054080088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JGS08_RS08920 (JGS08_08920) exbB 1939442..1940158 (+) 717 WP_080394009.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JGS08_RS08925 (JGS08_08925) - 1940155..1940586 (+) 432 WP_007253407.1 biopolymer transporter ExbD -
  JGS08_RS08930 (JGS08_08930) lpxK 1940586..1941581 (+) 996 WP_007253406.1 tetraacyldisaccharide 4'-kinase -
  JGS08_RS08935 (JGS08_08935) - 1941599..1941784 (+) 186 WP_007253405.1 Trm112 family protein -
  JGS08_RS08940 (JGS08_08940) kdsB 1941781..1942545 (+) 765 WP_007253404.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JGS08_RS08945 (JGS08_08945) murB 1942580..1943599 (+) 1020 WP_007253403.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25766.21 Da        Isoelectric Point: 7.3259

>NTDB_id=524509 JGS08_RS08920 WP_080394009.1 1939442..1940158(+) (exbB) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
MVEWRQFFDGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQENKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSSGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=524509 JGS08_RS08920 WP_080394009.1 1939442..1940158(+) (exbB) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
ATGGTAGAGTGGCGCCAATTTTTCGATGGAGTGATCACTGTGTGGGAACTGGTCAAGTCTGGCGGCTGGATGATGCTGCC
GATCATTTTGAGTTCCATTGCCGCTGCCGGCATCATCATCGAGCGTTTATGGACGCTGCGGGCCAGCCGGATCGCCCCGC
CGCATCTGTTGGGACAGGCCTGGCAGTGGATTCAGGAAAACAAGCTCGACAGCGAAAAGCTCAAGCAACTGCGCGCCGAT
TCACCCTTGGGTGAAATCCTCGCCGCAGGTCTGGCGAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCCGCCCGTGTCATTCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCGATTGCTGCCATGGCGCCACTGCTCG
GCCTGCTCGGTACAGTGCTGGGTATGATCGAAATTTTCGGCTCGTTCAACAGTTCCGGCGCGACCGCCAATGCCGGCGTG
CTGGCAAGCGGCATTTCCAAGGCGCTGATTTGTACCGCATCAGGCCTGATCGTCGCGATCCCGGCCATCTTCTTTCATCG
CTTTCTGCAAAGCCGTGTCGACGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGGTTGATCTCAAGTCGCTCGCCAAAGCGGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.619

88.235

0.685