Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JGS08_RS08915 Genome accession   NZ_CP067022
Coordinates   1937183..1939399 (+) Length   738 a.a.
NCBI ID   WP_054080088.1    Uniprot ID   A0A8T8C3H1
Organism   Pseudomonas cannabina pv. alisalensis strain MAFF 301419     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932183..1944399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGS08_RS08905 (JGS08_08905) - 1934080..1934931 (-) 852 WP_007253412.1 DUF4123 domain-containing protein -
  JGS08_RS08910 (JGS08_08910) - 1934928..1936955 (-) 2028 WP_054080089.1 type VI secretion system tip protein VgrG -
  JGS08_RS08915 (JGS08_08915) comA 1937183..1939399 (+) 2217 WP_054080088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JGS08_RS08920 (JGS08_08920) exbB 1939442..1940158 (+) 717 WP_080394009.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JGS08_RS08925 (JGS08_08925) - 1940155..1940586 (+) 432 WP_007253407.1 biopolymer transporter ExbD -
  JGS08_RS08930 (JGS08_08930) lpxK 1940586..1941581 (+) 996 WP_007253406.1 tetraacyldisaccharide 4'-kinase -
  JGS08_RS08935 (JGS08_08935) - 1941599..1941784 (+) 186 WP_007253405.1 Trm112 family protein -
  JGS08_RS08940 (JGS08_08940) kdsB 1941781..1942545 (+) 765 WP_007253404.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JGS08_RS08945 (JGS08_08945) murB 1942580..1943599 (+) 1020 WP_007253403.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80484.65 Da        Isoelectric Point: 10.4335

>NTDB_id=524508 JGS08_RS08915 WP_054080088.1 1937183..1939399(+) (comA) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
MRTGMIALALGLVALRFLPALPPTWLLLLMPVVALMLLPFRTYPVALFLLGFTWACVSAQWALNDRLSQRLDGQTLWVQG
KVVGLPSVAEGVVRFELEDARSRRATLPALIRVAWYGGPEIRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVADGQLLAPARGAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSRTDWQVLQDTGTVHLLVISGQHIGLLAGVVYAL
VAGLARWGVWPRALPWLPSACVLAFGAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILLLIFSGRLGAWRWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLVAVPWVSVIVLPPAL
LGTLLLPVPLLGEGLLWLAGGALEWLFMFLDRVAAVLPAWLPSAVPGWAWGLSFLGGLLLLLPRGVPMRPLGWPLLLLCV
FPPLEEVPDGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAIRKAGVRRLDLMLISHADADHAGGA
LAVHQAFPVKRVLGGERAKLAPQLNAALCESGERWEWDGVVFSTWRWEQAPDGNAASCILSVDAGGERLLLAGDIDVHAE
RAAMDSGFDLRAHWLQSPHHGSRSSSSKPFLQAVAPVGVLISRGRNNAFGHPHPRVMARYRWLGIASYDSAELGAISLQL
GTFGPPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=524508 JGS08_RS08915 WP_054080088.1 1937183..1939399(+) (comA) [Pseudomonas cannabina pv. alisalensis strain MAFF 301419]
ATGCGCACAGGGATGATCGCGCTCGCGCTGGGGCTGGTTGCCTTGCGTTTTCTGCCTGCCTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGGTGGTGGCATTGATGCTGCTGCCGTTTCGCACCTATCCAGTGGCGCTGTTTCTGCTCGGCTTCACAT
GGGCGTGCGTTTCGGCGCAGTGGGCATTGAATGATCGTCTGTCGCAGCGGCTGGACGGGCAGACGTTGTGGGTGCAAGGC
AAGGTGGTCGGGCTGCCGAGTGTCGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGGACGCCCGCTCACGGCGGGCGACGTT
ACCTGCGCTGATTCGAGTGGCCTGGTATGGCGGTCCCGAGATACGCAGTGGCGAGCGCTGGCGTCTGGCGGTCAAACTCA
AGCGTCCTGGCGGGCTGGTCAATCCGGATGCCTTCGATTATCAGGCCTGGTTGCTGGCGCAGCGTATCGGTGCGACCGGC
ACTGTGGCAGACGGCCAACTGCTGGCCCCGGCGCGTGGGGCGTGGCGCGACGGCATTCGACAGCGGTTGCTGGCGGTCGA
TGCGCAGGGCCGGGAAGGCGGGCTGGCCGCGTTAGTGCTGGGCGATGGCTCGGGTTTGTCGCGCACCGACTGGCAGGTGC
TGCAAGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTCGCCGGGGTGGTCTATGCGCTG
GTTGCCGGCCTGGCGCGTTGGGGAGTTTGGCCGCGAGCGTTGCCCTGGCTACCCAGTGCTTGCGTCCTGGCGTTTGGCGC
GGCGTTGGGTTACGGGCTGCTGGCCGGTTTCGAAGTGCCAGTGCGGCGCGCCTGTGTGATGGTCGCCATGGTGCTGCTCT
GGCGTCTGCGTTTTCGGCATCTGGGGGTGGTCTGGCCGTTGCTGCTGTCATTTAACACGGTGCTGATCTTCGAGCCGCTG
GTCACGTTGCAACCGGGCTTCTGGTTGTCATTCGCGGCAGTCGGCATTCTGCTACTTATTTTCAGCGGCCGGCTGGGCGC
CTGGCGCTGGTGGCAGAGCTGGACGCGTGCGCAATGGTTGATCGCTATCGGGCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGTCCGTTTGCCAACCTTGTCGCTGTGCCATGGGTCAGCGTGATCGTTCTGCCGCCCGCATTG
CTCGGGACGCTGCTGTTGCCGGTCCCGCTTTTGGGTGAAGGGCTGTTATGGCTGGCCGGAGGTGCGCTGGAATGGCTGTT
CATGTTTCTCGACCGGGTCGCCGCAGTGCTGCCTGCCTGGTTGCCCAGTGCCGTGCCGGGTTGGGCCTGGGGGTTGAGTT
TTTTGGGGGGCTTGTTGTTATTGCTGCCCAGAGGCGTGCCGATGCGTCCGCTGGGTTGGCCGCTGCTGCTGTTGTGCGTG
TTCCCGCCGCTTGAGGAAGTGCCAGACGGGCAGGTTGAAGTCCTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGTT
GCGTACGCGCAACCACACCCTGTTGTATGACGCCGGGCCGCGCTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CTGCCATCCGCAAAGCCGGTGTCCGTCGCCTTGATCTGATGCTGATTAGCCATGCCGATGCGGATCACGCCGGTGGTGCC
CTGGCGGTTCATCAGGCCTTCCCGGTGAAGCGGGTGCTGGGCGGTGAGCGGGCCAAGCTCGCCCCGCAACTCAATGCGGC
GCTGTGCGAAAGCGGCGAGCGCTGGGAATGGGATGGCGTGGTTTTCAGCACCTGGCGCTGGGAACAGGCTCCCGATGGTA
ATGCGGCCTCCTGCATCCTGAGCGTCGACGCGGGTGGCGAGCGCCTGCTGCTGGCGGGCGACATCGATGTTCATGCCGAG
CGTGCGGCCATGGACAGTGGCTTCGATCTGCGCGCTCACTGGTTGCAGTCCCCGCACCATGGCAGTCGGTCATCTTCATC
GAAACCCTTTCTTCAGGCTGTCGCGCCCGTCGGCGTGTTGATCTCCCGAGGGCGTAACAATGCGTTCGGGCATCCGCACC
CGCGGGTCATGGCGCGTTACCGATGGCTGGGCATAGCGAGTTACGACAGCGCTGAACTGGGTGCCATCAGTCTGCAACTG
GGCACATTCGGTCCGCCCCGTGCAGAGCGTGCGCAGCGGCGTTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.128

97.019

0.612
  comA Ralstonia pseudosolanacearum GMI1000

34.164

100

0.39