Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JFY49_RS13970 Genome accession   NZ_CP067019
Coordinates   2837090..2837722 (+) Length   210 a.a.
NCBI ID   WP_166168697.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2832090..2842722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS13955 (JFY49_13955) - 2832571..2833797 (-) 1227 WP_180174931.1 transposase -
  JFY49_RS13960 (JFY49_13960) - 2834068..2834874 (-) 807 WP_200223234.1 NAD-dependent epimerase/dehydratase family protein -
  JFY49_RS13965 (JFY49_13965) recG 2834910..2836955 (+) 2046 WP_200223235.1 ATP-dependent DNA helicase RecG -
  JFY49_RS13970 (JFY49_13970) comF 2837090..2837722 (+) 633 WP_166168697.1 ComF family protein Machinery gene
  JFY49_RS13975 (JFY49_13975) - 2837805..2838212 (-) 408 WP_180080504.1 NUDIX hydrolase -
  JFY49_RS13980 (JFY49_13980) - 2838209..2838808 (-) 600 WP_200223236.1 TIGR00730 family Rossman fold protein -
  JFY49_RS13985 (JFY49_13985) - 2838958..2839971 (+) 1014 WP_086195789.1 CorA family divalent cation transporter -
  JFY49_RS13990 (JFY49_13990) - 2840215..2840505 (-) 291 WP_086195790.1 lipid asymmetry maintenance protein MlaB -
  JFY49_RS13995 (JFY49_13995) - 2840522..2841148 (-) 627 WP_200223237.1 phospholipid-binding protein MlaC -
  JFY49_RS14000 (JFY49_14000) - 2841167..2841838 (-) 672 WP_200223238.1 outer membrane lipid asymmetry maintenance protein MlaD -
  JFY49_RS14005 (JFY49_14005) mlaE 2841838..2842617 (-) 780 WP_166168689.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24151.57 Da        Isoelectric Point: 9.9490

>NTDB_id=524481 JFY49_RS13970 WP_166168697.1 2837090..2837722(+) (comF) [Acinetobacter sp. CS-2]
MLQLIHPLLHKAMQSLFPCVLCGIDQQRHHSVCTDCWQQLPWLKQTIRRQEMEIQVACHYAYPMDRIIQKFKYEQQLHFQ
NLLAGSLIGLKLPKIQAIVPMPISHQRLAERGYNQSLVLAKLLAKQLNIPVWQPVARLAQHSQKGLSRIERLDQIDQQFV
IATKTRVRYRKVLMLDDVVTTGSSLHALKQKLEALGCQKVYAACIASAEI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=524481 JFY49_RS13970 WP_166168697.1 2837090..2837722(+) (comF) [Acinetobacter sp. CS-2]
ATGCTGCAATTGATTCACCCCTTACTGCACAAAGCCATGCAGAGCCTTTTCCCCTGTGTACTTTGTGGCATAGACCAGCA
ACGTCATCATTCAGTCTGTACAGATTGCTGGCAACAATTGCCCTGGTTGAAACAGACCATCCGACGACAGGAAATGGAGA
TTCAGGTGGCCTGTCATTATGCCTATCCGATGGACCGTATTATTCAAAAATTCAAATATGAACAACAGCTGCACTTTCAA
AATCTGCTTGCTGGCTCACTTATCGGTCTCAAACTTCCCAAAATCCAAGCCATTGTCCCGATGCCCATTTCCCATCAGCG
TTTGGCAGAACGGGGGTATAACCAGTCTTTGGTGCTTGCGAAACTCCTGGCAAAACAGCTGAATATTCCAGTCTGGCAAC
CGGTTGCACGACTGGCCCAACATTCGCAAAAAGGCTTGAGCCGGATCGAACGGCTGGATCAGATTGACCAGCAGTTTGTG
ATTGCCACAAAGACCCGTGTGCGTTACCGCAAAGTGCTGATGCTGGATGATGTAGTCACGACCGGCAGTTCGCTACATGC
TTTAAAACAGAAACTTGAAGCATTAGGCTGTCAAAAAGTTTATGCAGCCTGTATTGCCAGTGCAGAGATTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.058

99.048

0.605
  comF Acinetobacter baumannii D1279779

61.058

99.048

0.605