Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JFY49_RS01100 Genome accession   NZ_CP067019
Coordinates   238577..239731 (-) Length   384 a.a.
NCBI ID   WP_180042919.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 233577..244731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS01075 (JFY49_01075) - 233724..234266 (-) 543 WP_180042914.1 hypothetical protein -
  JFY49_RS01080 (JFY49_01080) - 234456..235208 (-) 753 WP_180176443.1 AraC family transcriptional regulator -
  JFY49_RS01085 (JFY49_01085) - 235392..236306 (+) 915 WP_180042916.1 DMT family transporter -
  JFY49_RS01090 (JFY49_01090) - 236725..237294 (-) 570 WP_180042917.1 L-threonylcarbamoyladenylate synthase -
  JFY49_RS01095 (JFY49_01095) dprA 237337..238482 (-) 1146 WP_180042918.1 DNA-processing protein DprA Machinery gene
  JFY49_RS01100 (JFY49_01100) tsaP 238577..239731 (-) 1155 WP_180042919.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JFY49_RS01105 (JFY49_01105) def 239851..240381 (+) 531 WP_086196623.1 peptide deformylase -
  JFY49_RS01110 (JFY49_01110) - 240475..240897 (+) 423 WP_180042920.1 DUF2946 family protein -
  JFY49_RS01115 (JFY49_01115) - 240985..242997 (+) 2013 WP_180082085.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41880.32 Da        Isoelectric Point: 9.2584

>NTDB_id=524457 JFY49_RS01100 WP_180042919.1 238577..239731(-) (tsaP) [Acinetobacter sp. CS-2]
MKKVLKGMPTFSALGFKKQLLALAVCVSVGAGMVSIAEAAPARNINPPALKAGAPQVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCTYNGKPIIGKDEGDGCEGIIRRYTGGTKLQPQVRVESLNNAIPVIPLEHIKQWLE
RSTIVAPESITGTPYILGTADQRVLAAQGQTVYARGNGLEVGQRYAVYREGEPYMFTDAKGKKYNAGLELIQVASGIAIR
GENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEDVVAGGQVVRVMGSIGTAAKHSVVTIDRGSLQGVQAGQ
VLTVSQKGEVVTDPKTKERIQLPGQHIGNIMVFKSFDNLSYAYVLDSELPIKVGAGIQPPLMDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=524457 JFY49_RS01100 WP_180042919.1 238577..239731(-) (tsaP) [Acinetobacter sp. CS-2]
ATGAAAAAGGTTTTGAAGGGCATGCCAACTTTTAGTGCCTTGGGGTTTAAAAAACAATTGTTGGCACTTGCCGTATGTGT
AAGTGTTGGGGCCGGCATGGTCAGCATTGCTGAAGCAGCACCTGCTCGTAATATCAATCCACCTGCATTAAAAGCCGGAG
CACCACAAGTTTATGTGGTGAAAAAAGGCGATACTTTATGGGATATTTCCAAAAGATTTTTGAAGAATCCAGTACGTTGG
CCTGAAATCTGGGCCAGCAATAAACATGTGAAAAACCCACACTGGATTTTCCCGGGCGACCGCCTGCTCATGTGTACCTA
TAACGGCAAACCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATCCGTCGTTATACCGGTGGCACCAAGT
TACAACCTCAGGTTCGGGTAGAATCATTAAACAATGCCATTCCAGTCATTCCGCTGGAACACATCAAGCAGTGGTTAGAA
CGCAGCACCATTGTTGCACCTGAATCCATCACAGGTACGCCATACATTTTAGGCACGGCGGACCAACGTGTTCTGGCGGC
TCAAGGTCAAACAGTATATGCGCGCGGTAATGGTCTGGAAGTGGGCCAACGCTATGCCGTTTACCGTGAAGGTGAACCGT
ATATGTTTACCGATGCAAAAGGCAAAAAATACAATGCTGGTCTTGAATTGATTCAGGTGGCATCTGGCATTGCCATCCGT
GGTGAAAATGACATTACTACGCTTGAACTGACAGATACCTATAATGCTGAAGTTCGTCGTGGCGACCGTGTATTGCCTGA
ATACGATCCAATGCTTCCAACCTTATTCTACCCAACCAATGCTGAAGATGTGGTTGCCGGTGGCCAAGTGGTTCGCGTGA
TGGGATCAATTGGCACTGCTGCGAAACACAGTGTAGTGACGATTGACCGTGGTAGTTTGCAAGGCGTTCAAGCTGGACAG
GTATTGACGGTGAGCCAGAAAGGCGAAGTCGTGACTGACCCGAAAACCAAAGAGCGTATTCAACTCCCTGGACAGCACAT
TGGTAACATCATGGTATTCAAGAGCTTTGATAACCTGAGTTATGCCTATGTACTGGATAGCGAATTGCCAATTAAAGTCG
GTGCTGGCATCCAGCCACCACTAATGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.43

100

0.698