Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6I26_RS07665 Genome accession   NZ_CP067014
Coordinates   1584874..1585743 (-) Length   289 a.a.
NCBI ID   WP_070451344.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1069     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1579874..1590743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I26_RS07650 (I6I26_07650) xerC 1580145..1581035 (-) 891 WP_126567299.1 tyrosine recombinase XerC -
  I6I26_RS07655 (I6I26_07655) trmFO 1581201..1582508 (-) 1308 WP_029055445.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I6I26_RS07660 (I6I26_07660) topA 1582621..1584696 (-) 2076 WP_026083538.1 type I DNA topoisomerase -
  I6I26_RS07665 (I6I26_07665) dprA 1584874..1585743 (-) 870 WP_070451344.1 DNA-processing protein DprA Machinery gene
  I6I26_RS07670 (I6I26_07670) - 1585954..1587192 (-) 1239 WP_070451346.1 aminoacyltransferase -
  I6I26_RS07675 (I6I26_07675) - 1587223..1588403 (-) 1181 Protein_1482 LysM peptidoglycan-binding domain-containing protein -
  I6I26_RS07680 (I6I26_07680) sucD 1588530..1589435 (-) 906 WP_017638387.1 succinate--CoA ligase subunit alpha -
  I6I26_RS07685 (I6I26_07685) sucC 1589457..1590623 (-) 1167 WP_017638388.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33615.51 Da        Isoelectric Point: 8.9572

>NTDB_id=524424 I6I26_RS07665 WP_070451344.1 1584874..1585743(-) (dprA) [Staphylococcus pasteuri strain FDAARGOS_1069]
MNKHFLLKLYWAQFTTSQIHQLNQYYPQLFHVNDYEQESLLHCWITQYQPRLLPKFLDYKQFQYNEIMKVLRQLDINYIT
YFDKDYPYLLKEIYDYPFVLFYKGNKDILKNDKTLAIVGARKCTNYTSQALNYLFPSFKRAQLTIVSGLAAGADSEAHQQ
TLNAYLPTIAVLGYGHTHHYPKSTFSLRKKIEEQGIVISEYPPFSPIAKYKFPARNRLISGLSKGVLLTEANERSGSRIT
IDCALEQNRNVYVLPGKIFDTSTKGNLLLHQEGATIVVNEHDILQDYSI

Nucleotide


Download         Length: 870 bp        

>NTDB_id=524424 I6I26_RS07665 WP_070451344.1 1584874..1585743(-) (dprA) [Staphylococcus pasteuri strain FDAARGOS_1069]
TTGAACAAACATTTTTTACTTAAATTATACTGGGCTCAGTTTACTACTTCACAAATACATCAACTCAACCAATATTATCC
ACAGCTCTTTCATGTTAATGATTATGAACAAGAATCGTTATTACATTGTTGGATTACTCAATACCAGCCACGATTATTGC
CTAAGTTCCTTGACTACAAACAATTTCAATATAATGAAATTATGAAAGTTCTTCGACAATTAGATATCAACTATATCACC
TATTTTGATAAAGATTATCCCTATTTATTAAAAGAAATTTATGATTATCCTTTTGTCTTATTTTATAAGGGTAATAAAGA
CATTTTAAAAAACGATAAAACTTTAGCTATAGTTGGTGCTAGAAAGTGTACAAACTATACAAGCCAAGCACTTAATTATC
TTTTTCCTTCATTTAAAAGAGCTCAACTTACAATTGTATCTGGTCTTGCTGCAGGAGCAGATAGTGAGGCACATCAACAG
ACATTGAATGCCTATTTGCCTACAATTGCTGTATTAGGTTATGGACATACACATCATTATCCAAAATCTACTTTTTCACT
TAGAAAGAAAATTGAAGAACAAGGTATTGTTATTAGCGAATATCCACCATTTTCTCCAATAGCGAAATATAAATTTCCTG
CAAGGAACAGATTGATTAGTGGTTTATCAAAAGGTGTTTTATTAACAGAAGCTAATGAAAGAAGTGGAAGTCGTATTACT
ATAGATTGTGCACTTGAACAAAATCGAAATGTCTATGTATTACCAGGAAAAATATTTGATACCTCAACAAAAGGGAATTT
ATTATTGCATCAAGAAGGCGCAACGATTGTTGTGAATGAACATGATATCTTACAAGACTATTCAATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.931

100

0.581
  dprA Staphylococcus aureus N315

57.931

100

0.581