Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6H70_RS08925 Genome accession   NZ_CP067013
Coordinates   1917422..1919014 (+) Length   530 a.a.
NCBI ID   WP_234292962.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain FDAARGOS_1013     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912422..1924014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H70_RS08905 (I6H70_08905) pgeF 1914276..1915007 (-) 732 WP_200293703.1 peptidoglycan editing factor PgeF -
  I6H70_RS08910 (I6H70_08910) rluD 1915004..1915978 (-) 975 WP_043218532.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6H70_RS08915 (I6H70_08915) - 1916126..1917118 (+) 993 WP_041107883.1 outer membrane protein assembly factor BamD -
  I6H70_RS08920 (I6H70_08920) - 1917199..1917432 (+) 234 WP_043218531.1 PP0621 family protein -
  I6H70_RS08925 (I6H70_08925) pilS 1917422..1919014 (+) 1593 WP_234292962.1 PAS domain-containing sensor histidine kinase Regulator
  I6H70_RS08930 (I6H70_08930) pilR 1919122..1920459 (+) 1338 WP_200293709.1 sigma-54 dependent transcriptional regulator Regulator
  I6H70_RS08935 (I6H70_08935) - 1920504..1921556 (-) 1053 WP_041107889.1 DUF2333 family protein -
  I6H70_RS08940 (I6H70_08940) - 1921749..1923344 (+) 1596 WP_200293725.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58414.33 Da        Isoelectric Point: 7.0847

>NTDB_id=524377 I6H70_RS08925 WP_234292962.1 1917422..1919014(+) (pilS) [Stutzerimonas balearica strain FDAARGOS_1013]
MDTDTLAIVAGQSQRILRLYHLYRLAIGLALVLLISSDLHNDLLQMSNPQLFSYGAWLYLIVNIVVAVLLQNPTQTVQVL
ALALVDVMLLAALFYFAGGTPSGIGNLLIIAVAISNILVRGKVGFLIAAVAATGLIYLTFYLSLSHPAANSQFVQAGALG
TLCFAAAFLVQGLTRRLQASEDLARQRAADVANLEALNTLILQRMRTGILVLDPQQRVLLANQGALQMLEQDSLTGTKLA
EHCPDLIARLGQWQNNPTLRAQGLQISSGGPMLQPSFASLQHGERCNTLVFLEDISQIAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEQLDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRSGLSPR
QCLHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQVHDTAQVWLRLYRDESSDLPMAEVLDDGPGVAPEQLSNIFEP
FYTTESKGTGLGLYISRELCESNQARLDYQPRPEGGSCFRIVFAHPRKLG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=524377 I6H70_RS08925 WP_234292962.1 1917422..1919014(+) (pilS) [Stutzerimonas balearica strain FDAARGOS_1013]
GTGGACACTGACACCCTGGCCATCGTCGCTGGCCAGAGCCAGCGCATCCTGCGTCTCTACCACCTCTACCGCCTCGCCAT
CGGGCTGGCGCTGGTGCTGCTGATCAGCAGCGATCTGCACAACGACCTGCTGCAGATGAGCAACCCGCAGCTGTTCAGCT
ACGGCGCCTGGCTCTACCTGATCGTCAACATCGTTGTCGCGGTACTGCTGCAGAACCCCACACAGACGGTACAGGTCCTG
GCGCTGGCTCTGGTCGACGTGATGCTACTGGCCGCCCTGTTCTATTTTGCTGGCGGCACGCCCAGCGGGATCGGCAACCT
GCTGATCATCGCGGTGGCCATCTCGAACATCCTGGTACGCGGCAAGGTCGGCTTTCTGATCGCCGCGGTCGCGGCTACCG
GCCTGATCTACCTGACCTTTTACCTGAGCCTCAGCCACCCGGCCGCCAACAGCCAGTTCGTCCAGGCGGGCGCACTGGGC
ACGCTGTGCTTCGCCGCCGCTTTTCTGGTCCAGGGCCTGACGCGTCGCCTGCAAGCCAGTGAAGACCTGGCCCGTCAGCG
CGCGGCGGACGTCGCGAACCTCGAGGCGCTGAACACGCTCATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACC
CGCAGCAGCGCGTACTGCTGGCCAATCAGGGTGCGCTGCAGATGCTCGAACAGGACAGCCTCACCGGCACGAAGCTGGCC
GAGCATTGCCCGGACCTGATCGCGCGCCTGGGCCAATGGCAGAACAACCCGACCTTGCGCGCCCAGGGACTGCAGATTTC
CAGCGGCGGGCCGATGCTGCAGCCGAGCTTTGCCTCGCTGCAGCATGGCGAGCGATGCAATACGCTGGTGTTTCTCGAAG
ATATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCTTCGCTCGGCCGGCTGACCGCCAGCATCGCCCATGAG
ATCCGCAACCCGCTTGGTGCGATCAGCCATGCCGCCCAGCTGCTGCAGGAATCCGAGCAGCTCGACGGCCCGGATCGCCG
GCTGGCACAGATCATCCAGGATCATTCGAGACGCATGAATCTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGACGGC
AGGCGGAACCGCAGCTGCTGGACTTGAAGTACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCAGCGGCCTTTCGCCGCGC
CAGTGCCTGCATCTGGAAACCATCGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACGCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTGCGCTATAGCGGGCAGGTGCACGACACAGCCCAGGTATGGCTGCGCCTGTACCGCGACGAGT
CCAGCGACCTGCCGATGGCCGAAGTGCTCGACGATGGTCCCGGTGTGGCACCGGAACAGCTGAGCAACATCTTCGAGCCC
TTCTATACCACCGAGAGCAAGGGCACCGGGCTGGGCTTGTACATTTCGCGGGAGCTGTGCGAGAGCAATCAGGCGCGCCT
GGACTATCAGCCCCGTCCGGAAGGTGGCAGCTGCTTCCGCATTGTCTTCGCCCATCCGCGCAAGCTGGGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.083

99.811

0.64