Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6T40_RS05420 Genome accession   NZ_CP081923
Coordinates   1116412..1116996 (+) Length   194 a.a.
NCBI ID   WP_014937999.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20160930RA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111412..1121996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T40_RS05410 (K6T40_05410) - 1111861..1114791 (+) 2931 WP_038693793.1 SusC/RagA family TonB-linked outer membrane protein -
  K6T40_RS05415 (K6T40_05415) - 1114805..1116241 (+) 1437 WP_038694272.1 RagB/SusD family nutrient uptake outer membrane protein -
  K6T40_RS05420 (K6T40_05420) ruvA 1116412..1116996 (+) 585 WP_014937999.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21408.94 Da        Isoelectric Point: 6.4970

>NTDB_id=524282 K6T40_RS05420 WP_014937999.1 1116412..1116996(+) (ruvA) [Riemerella anatipestifer strain 20160930RA1]
MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHFSIGKESLIYTQQIIREDAHLLYGFSELKEKEMFNLLISVNGV
GPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKTAQRIIIDLKDKVLHFGADESDISTVIDNKVKEESLSALEVL
GIPKKMSEKLADKILKQNPEIQTEDLVKQILKNI

Nucleotide


Download         Length: 585 bp        

>NTDB_id=524282 K6T40_RS05420 WP_014937999.1 1116412..1116996(+) (ruvA) [Riemerella anatipestifer strain 20160930RA1]
ATGATTTACTCTCTACGAGGTATCGTTCAGGAGCTTAGCCCAACCCATTTAATTATAGAAACTGGTGGTGTAGGCTACTT
TGTAAGCGTTAGTGTAAACACTTCTAAACACTTTTCCATTGGGAAAGAATCTTTAATCTACACACAACAAATCATTCGAG
AAGACGCTCACTTATTGTACGGTTTTTCGGAGCTCAAAGAGAAAGAAATGTTTAACCTACTTATTTCTGTAAATGGTGTA
GGACCAGCCTCTGCTATGATTATGCTTTCCTCACTAGAATTAAGAGAAATAGCACAAGCCATACTCTCTAGCAATAGTGC
TGTATTACAAAAAGTAAAAGGTATAGGCACCAAAACTGCACAACGAATTATCATTGATTTAAAAGATAAAGTATTGCATT
TTGGAGCAGATGAATCTGATATTTCCACCGTTATTGATAATAAAGTAAAAGAAGAATCGTTATCTGCATTAGAAGTTTTA
GGAATTCCTAAAAAAATGTCAGAAAAATTAGCAGACAAAATTTTGAAACAAAATCCAGAAATTCAAACGGAAGATTTAGT
AAAACAAATTTTGAAAAATATTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-129)

RuvA, C-terminal domain (RuvA_C)

(149-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.804

100

0.366
  ruvA Helicobacter pylori 26695

35.897

100

0.361