Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BTG_RS10185 Genome accession   NC_018500
Coordinates   2052098..2052379 (-) Length   93 a.a.
NCBI ID   WP_000843024.1    Uniprot ID   A0A9W3J7M6
Organism   Bacillus thuringiensis HD-771     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047098..2057379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTG_RS10145 (BTG_10520) - 2048640..2049068 (-) 429 WP_001086032.1 phBC6A51 family helix-turn-helix protein -
  BTG_RS10150 (BTG_10525) - 2049782..2050162 (-) 381 WP_000196739.1 hypothetical protein -
  BTG_RS10155 (BTG_10530) - 2050420..2050749 (-) 330 WP_000200017.1 hypothetical protein -
  BTG_RS10160 (BTG_10535) - 2050739..2050921 (-) 183 WP_001106360.1 DUF6877 family protein -
  BTG_RS10165 (BTG_10540) - 2050918..2051445 (-) 528 WP_000712434.1 hypothetical protein -
  BTG_RS10170 (BTG_10545) - 2051445..2051708 (-) 264 WP_000865170.1 hypothetical protein -
  BTG_RS10180 (BTG_10555) - 2051899..2052096 (-) 198 WP_001294615.1 hypothetical protein -
  BTG_RS10185 (BTG_10560) abrB 2052098..2052379 (-) 282 WP_000843024.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BTG_RS10190 (BTG_10565) - 2052376..2052756 (-) 381 WP_000659528.1 hypothetical protein -
  BTG_RS10195 (BTG_10570) - 2052680..2052973 (-) 294 WP_001202996.1 hypothetical protein -
  BTG_RS10200 (BTG_10575) - 2053099..2053245 (-) 147 WP_000790088.1 BC1881 family protein -
  BTG_RS10205 (BTG_10580) - 2053248..2054111 (-) 864 WP_001025056.1 hypothetical protein -
  BTG_RS10210 (BTG_10585) - 2054128..2054445 (-) 318 WP_000805623.1 hypothetical protein -
  BTG_RS10215 (BTG_10590) - 2054472..2055116 (-) 645 WP_000101075.1 hypothetical protein -
  BTG_RS10220 (BTG_10595) - 2055103..2055528 (-) 426 WP_000053747.1 hypothetical protein -
  BTG_RS10225 (BTG_10600) - 2055561..2056148 (-) 588 WP_000680281.1 HNH endonuclease signature motif containing protein -
  BTG_RS10230 (BTG_10605) - 2056151..2056381 (-) 231 WP_001246457.1 hypothetical protein -
  BTG_RS35805 (BTG_10610) - 2056427..2056564 (-) 138 WP_001209164.1 hypothetical protein -
  BTG_RS10235 (BTG_10615) - 2056581..2056997 (-) 417 WP_000658752.1 YopX family protein -
  BTG_RS10240 (BTG_10620) - 2057035..2057289 (-) 255 WP_001233222.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10235.86 Da        Isoelectric Point: 4.4633

>NTDB_id=52422 BTG_RS10185 WP_000843024.1 2052098..2052379(-) (abrB) [Bacillus thuringiensis HD-771]
MKSTGIIRNIDPLGRIVVPMELRRTLGIQVKDPMEIFVDGESIILQKYNPNNSCQITGEVSEENIELAGGKLVLSPEGID
QVLGEIEAFLKGR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=52422 BTG_RS10185 WP_000843024.1 2052098..2052379(-) (abrB) [Bacillus thuringiensis HD-771]
ATGAAATCAACAGGTATCATTCGTAACATCGATCCACTAGGACGAATTGTAGTTCCAATGGAATTACGCCGTACATTAGG
TATCCAGGTAAAGGATCCTATGGAGATTTTCGTAGATGGTGAATCTATTATTCTACAAAAATATAATCCTAATAATTCTT
GCCAAATCACAGGCGAAGTTTCTGAAGAAAATATTGAACTAGCTGGCGGGAAACTCGTGCTTAGTCCTGAAGGTATTGAT
CAAGTTTTAGGAGAAATCGAAGCGTTTTTAAAGGGGCGATAA

Domains

Predicted by InterProScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-50)

AbrB C-terminal domain (AbrB_C)

(54-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.736

97.849

0.624

Multiple sequence alignment