Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JH311_RS05225 Genome accession   NZ_CP066987
Coordinates   1180507..1181766 (-) Length   419 a.a.
NCBI ID   WP_228424132.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 42-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175507..1186766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH311_RS05195 (JH311_05200) - 1175737..1177071 (+) 1335 WP_237351399.1 HAMP domain-containing sensor histidine kinase -
  JH311_RS05200 (JH311_05205) - 1177214..1177705 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  JH311_RS05205 (JH311_05210) - 1177702..1177992 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  JH311_RS05210 (JH311_05215) - 1178067..1178468 (-) 402 WP_040940795.1 SymE family type I addiction module toxin -
  JH311_RS05215 (JH311_05220) coaE 1179000..1179623 (-) 624 WP_274398949.1 dephospho-CoA kinase -
  JH311_RS05220 (JH311_05225) - 1179637..1180500 (-) 864 WP_228876553.1 A24 family peptidase -
  JH311_RS05225 (JH311_05230) pilC 1180507..1181766 (-) 1260 WP_228424132.1 type II secretion system F family protein Machinery gene
  JH311_RS05230 (JH311_05235) pilA2 1182118..1182528 (+) 411 WP_228424134.1 pilin Machinery gene
  JH311_RS05235 (JH311_05240) pilB 1182803..1184509 (+) 1707 WP_274400977.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH311_RS05240 (JH311_05245) pilR 1184927..1186321 (-) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46002.47 Da        Isoelectric Point: 10.2875

>NTDB_id=523924 JH311_RS05225 WP_228424132.1 1180507..1181766(-) (pilC) [Xanthomonas campestris pv. campestris strain 42-4]
MSVARSAIKKQPVDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=523924 JH311_RS05225 WP_228424132.1 1180507..1181766(-) (pilC) [Xanthomonas campestris pv. campestris strain 42-4]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTATTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTCCCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCAGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

39

95.465

0.372