Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | JH290_RS16220 | Genome accession | NZ_CP066978 |
| Coordinates | 3707288..3708682 (+) | Length | 464 a.a. |
| NCBI ID | WP_223646355.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. incanae strain 18048 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3702652..3754995 | 3707288..3708682 | within | 0 |
Gene organization within MGE regions
Location: 3702652..3754995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH290_RS16200 (JH290_16160) | - | 3702652..3703062 (-) | 411 | WP_323549302.1 | DNA-binding protein | - |
| JH290_RS16205 (JH290_16165) | sucD | 3703166..3704041 (-) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH290_RS16210 (JH290_16170) | sucC | 3704066..3705235 (-) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH290_RS16215 (JH290_16175) | - | 3705469..3707079 (+) | 1611 | WP_223646353.1 | HAMP domain-containing sensor histidine kinase | - |
| JH290_RS16220 (JH290_16180) | pilR | 3707288..3708682 (+) | 1395 | WP_223646355.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH290_RS16225 (JH290_16185) | - | 3708874..3709236 (+) | 363 | WP_217694196.1 | hypothetical protein | - |
| JH290_RS16230 (JH290_16190) | - | 3709236..3709973 (+) | 738 | WP_070690009.1 | zeta toxin family protein | - |
| JH290_RS16235 (JH290_16195) | pilB | 3710156..3711892 (-) | 1737 | WP_223646357.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH290_RS16240 (JH290_16200) | pilA | 3711986..3712432 (-) | 447 | WP_274704645.1 | pilin | Machinery gene |
| JH290_RS16250 (JH290_16205) | - | 3712552..3712992 (-) | 441 | WP_223646359.1 | pilin | - |
| JH290_RS16255 (JH290_16210) | pilC | 3713346..3714605 (+) | 1260 | WP_223646360.1 | type II secretion system F family protein | Machinery gene |
| JH290_RS16260 (JH290_16215) | - | 3714612..3715475 (+) | 864 | WP_223646361.1 | A24 family peptidase | - |
| JH290_RS16265 (JH290_16220) | coaE | 3715489..3716112 (+) | 624 | WP_223646362.1 | dephospho-CoA kinase | - |
| JH290_RS16270 (JH290_16225) | - | 3716643..3717044 (+) | 402 | WP_223646363.1 | SymE family type I addiction module toxin | - |
| JH290_RS16275 (JH290_16230) | - | 3717120..3717410 (+) | 291 | WP_014508712.1 | DUF1778 domain-containing protein | - |
| JH290_RS16280 (JH290_16235) | - | 3717407..3717898 (+) | 492 | WP_223646366.1 | GNAT family N-acetyltransferase | - |
| JH290_RS16285 (JH290_16240) | - | 3718041..3719375 (-) | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| JH290_RS16290 (JH290_16245) | - | 3719368..3720045 (-) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| JH290_RS16295 (JH290_16250) | rimK | 3720695..3721570 (-) | 876 | WP_070689999.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH290_RS16300 (JH290_16255) | glgX | 3722063..3724192 (+) | 2130 | WP_223646368.1 | glycogen debranching protein GlgX | - |
| JH290_RS16305 (JH290_16260) | - | 3724724..3725116 (-) | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH290_RS16310 (JH290_16265) | - | 3725207..3725602 (-) | 396 | WP_042594933.1 | hypothetical protein | - |
| JH290_RS16315 (JH290_16270) | - | 3725787..3725933 (-) | 147 | WP_116889157.1 | hypothetical protein | - |
| JH290_RS16320 | - | 3726051..3726362 (-) | 312 | WP_223646370.1 | hypothetical protein | - |
| JH290_RS16325 (JH290_16280) | - | 3726525..3726896 (-) | 372 | WP_116889159.1 | hypothetical protein | - |
| JH290_RS16330 (JH290_16285) | - | 3727594..3727935 (+) | 342 | WP_070689991.1 | hypothetical protein | - |
| JH290_RS16335 (JH290_16290) | - | 3728000..3728281 (+) | 282 | WP_076037058.1 | DUF6516 family protein | - |
| JH290_RS16340 (JH290_16295) | - | 3728289..3728657 (+) | 369 | WP_223646372.1 | transcriptional regulator | - |
| JH290_RS16345 (JH290_16300) | - | 3728729..3730324 (-) | 1596 | WP_223646374.1 | MobA/MobL family protein | - |
| JH290_RS16350 (JH290_16305) | - | 3730591..3730845 (+) | 255 | WP_223646376.1 | hypothetical protein | - |
| JH290_RS16355 (JH290_16310) | - | 3730873..3732294 (-) | 1422 | WP_223646379.1 | XVIPCD domain-containing protein | - |
| JH290_RS16360 (JH290_16315) | - | 3732287..3732976 (-) | 690 | WP_223646381.1 | hypothetical protein | - |
| JH290_RS16365 (JH290_16320) | - | 3733073..3734410 (-) | 1338 | WP_223646383.1 | hypothetical protein | - |
| JH290_RS16370 (JH290_16325) | - | 3734412..3736394 (-) | 1983 | WP_223646385.1 | DUF87 domain-containing protein | - |
| JH290_RS16375 (JH290_16330) | - | 3736405..3737232 (-) | 828 | WP_223646387.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| JH290_RS16380 (JH290_16335) | radC | 3737376..3737855 (-) | 480 | WP_029219507.1 | DNA repair protein RadC | - |
| JH290_RS16385 (JH290_16340) | - | 3738255..3738479 (-) | 225 | WP_029219506.1 | hypothetical protein | - |
| JH290_RS16390 (JH290_16345) | - | 3738677..3739351 (-) | 675 | WP_223646389.1 | Abi family protein | - |
| JH290_RS16395 (JH290_16350) | - | 3739376..3740478 (+) | 1103 | WP_223646391.1 | IS3-like element IS1404 family transposase | - |
| JH290_RS16405 (JH290_16360) | - | 3741642..3743042 (+) | 1401 | WP_223646393.1 | site-specific integrase | - |
| JH290_RS16410 (JH290_16365) | - | 3743124..3743507 (-) | 384 | WP_119129756.1 | hypothetical protein | - |
| JH290_RS16415 (JH290_16370) | - | 3743557..3743781 (+) | 225 | WP_075287338.1 | hypothetical protein | - |
| JH290_RS16420 (JH290_16375) | - | 3743814..3745343 (-) | 1530 | WP_075287337.1 | DndE family protein | - |
| JH290_RS16425 | - | 3745345..3746118 (-) | 774 | WP_223648261.1 | hypothetical protein | - |
| JH290_RS16430 (JH290_16380) | - | 3746022..3747422 (-) | 1401 | WP_223646395.1 | AAA family ATPase | - |
| JH290_RS16435 (JH290_16385) | - | 3747412..3747627 (-) | 216 | WP_017154970.1 | DNA modification system-associated small protein | - |
| JH290_RS16440 (JH290_16390) | dndC | 3747648..3748805 (-) | 1158 | WP_223646397.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| JH290_RS16445 (JH290_16395) | - | 3748936..3749265 (-) | 330 | WP_075287335.1 | helix-turn-helix transcriptional regulator | - |
| JH290_RS16450 (JH290_16400) | - | 3749367..3750128 (+) | 762 | WP_223646399.1 | hypothetical protein | - |
| JH290_RS16455 (JH290_16405) | - | 3750183..3750497 (+) | 315 | WP_223646401.1 | hypothetical protein | - |
| JH290_RS16460 (JH290_16410) | - | 3750494..3750874 (+) | 381 | WP_223646403.1 | hypothetical protein | - |
| JH290_RS16465 (JH290_16415) | - | 3751455..3752300 (+) | 846 | WP_139051259.1 | hypothetical protein | - |
| JH290_RS16470 (JH290_16420) | - | 3752311..3753156 (+) | 846 | WP_223646405.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50295.66 Da Isoelectric Point: 6.3588
>NTDB_id=523776 JH290_RS16220 WP_223646355.1 3707288..3708682(+) (pilR) [Xanthomonas campestris pv. incanae strain 18048]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=523776 JH290_RS16220 WP_223646355.1 3707288..3708682(+) (pilR) [Xanthomonas campestris pv. incanae strain 18048]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGTAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAGTACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCAGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTCCGCCTGCCCGCCCATGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGTAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAGTACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCAGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTCCGCCTGCCCGCCCATGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
48.922 |
100 |
0.489 |