Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | JH300_RS05380 | Genome accession | NZ_CP066970 |
| Coordinates | 1277988..1279382 (-) | Length | 464 a.a. |
| NCBI ID | WP_057671663.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 11085 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1228425..1284324 | 1277988..1279382 | within | 0 |
Gene organization within MGE regions
Location: 1228425..1284324
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH300_RS05155 (JH300_05130) | - | 1228425..1230305 (+) | 1881 | WP_019237331.1 | integrase arm-type DNA-binding domain-containing protein | - |
| JH300_RS05160 (JH300_05135) | - | 1230490..1230909 (+) | 420 | WP_019237332.1 | hypothetical protein | - |
| JH300_RS05165 (JH300_05140) | - | 1230942..1231943 (+) | 1002 | WP_274509914.1 | XVIPCD domain-containing protein | - |
| JH300_RS05170 (JH300_05145) | - | 1232014..1232664 (-) | 651 | WP_011038252.1 | LysR substrate-binding domain-containing protein | - |
| JH300_RS05175 (JH300_05150) | - | 1232767..1233060 (+) | 294 | WP_011038251.1 | helix-turn-helix transcriptional regulator | - |
| JH300_RS05180 (JH300_05155) | - | 1233088..1233972 (-) | 885 | WP_057671621.1 | LysR family transcriptional regulator | - |
| JH300_RS05185 (JH300_05160) | - | 1234725..1238825 (-) | 4101 | WP_081020747.1 | HigA family addiction module antitoxin | - |
| JH300_RS05190 (JH300_05165) | - | 1239299..1242562 (-) | 3264 | WP_057671623.1 | ATP-binding protein | - |
| JH300_RS05195 | - | 1242653..1242784 (+) | 132 | Protein_1001 | IS5/IS1182 family transposase | - |
| JH300_RS05200 (JH300_05170) | - | 1243753..1245291 (+) | 1539 | WP_011038243.1 | MASE1 domain-containing protein | - |
| JH300_RS05205 (JH300_05175) | - | 1246313..1246960 (+) | 648 | WP_016848927.1 | hypothetical protein | - |
| JH300_RS05210 (JH300_05180) | - | 1246992..1248131 (+) | 1140 | WP_017117946.1 | type IV secretion system protein | - |
| JH300_RS05215 (JH300_05185) | - | 1248209..1248748 (+) | 540 | WP_225443876.1 | DUF4189 domain-containing protein | - |
| JH300_RS05220 (JH300_05190) | - | 1249146..1249676 (+) | 531 | WP_011038239.1 | hypothetical protein | - |
| JH300_RS05225 (JH300_05195) | - | 1249673..1250332 (+) | 660 | WP_057671625.1 | hypothetical protein | - |
| JH300_RS05230 (JH300_05200) | - | 1250329..1251711 (+) | 1383 | WP_057671628.1 | DUF6792 domain-containing protein | - |
| JH300_RS05235 (JH300_05205) | - | 1251815..1252164 (+) | 350 | Protein_1009 | type IV secretion system protein | - |
| JH300_RS05240 (JH300_05210) | - | 1252751..1253895 (+) | 1145 | WP_274349786.1 | IS3 family transposase | - |
| JH300_RS05245 (JH300_05215) | radC | 1254444..1254923 (+) | 480 | WP_075286085.1 | DNA repair protein RadC | - |
| JH300_RS05250 (JH300_05220) | - | 1254994..1255185 (+) | 192 | WP_221261829.1 | hypothetical protein | - |
| JH300_RS05255 (JH300_05225) | - | 1255819..1255974 (+) | 156 | WP_186009287.1 | hypothetical protein | - |
| JH300_RS22425 | - | 1256963..1257388 (+) | 426 | Protein_1014 | XVIPCD domain-containing protein | - |
| JH300_RS05265 (JH300_05235) | - | 1257416..1257670 (-) | 255 | WP_057671639.1 | hypothetical protein | - |
| JH300_RS05270 (JH300_05240) | - | 1257937..1259532 (+) | 1596 | WP_192012501.1 | MobA/MobL family protein | - |
| JH300_RS05275 (JH300_05245) | - | 1259605..1259973 (-) | 369 | WP_225443877.1 | transcriptional regulator | - |
| JH300_RS05280 (JH300_05250) | - | 1259981..1260262 (-) | 282 | WP_011348355.1 | DUF6516 family protein | - |
| JH300_RS05285 (JH300_05255) | - | 1260328..1260669 (-) | 342 | WP_081020748.1 | hypothetical protein | - |
| JH300_RS05290 (JH300_05260) | - | 1261395..1261745 (+) | 351 | WP_225443878.1 | hypothetical protein | - |
| JH300_RS05295 (JH300_05265) | - | 1262045..1262275 (-) | 231 | WP_157382680.1 | hypothetical protein | - |
| JH300_RS05300 (JH300_05270) | - | 1262339..1262485 (+) | 147 | WP_040940792.1 | hypothetical protein | - |
| JH300_RS05305 (JH300_05275) | - | 1262670..1263065 (+) | 396 | WP_042594933.1 | hypothetical protein | - |
| JH300_RS05310 (JH300_05280) | - | 1263156..1263548 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH300_RS05315 (JH300_05285) | glgX | 1264083..1266212 (-) | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| JH300_RS05320 (JH300_05290) | rimK | 1266706..1267581 (+) | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH300_RS05325 (JH300_05295) | - | 1268231..1268908 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| JH300_RS05330 (JH300_05300) | - | 1268901..1270235 (+) | 1335 | WP_057671653.1 | HAMP domain-containing sensor histidine kinase | - |
| JH300_RS05335 (JH300_05305) | - | 1270378..1270869 (-) | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | - |
| JH300_RS05340 (JH300_05310) | - | 1270866..1271156 (-) | 291 | WP_011038219.1 | DUF1778 domain-containing protein | - |
| JH300_RS05345 (JH300_05315) | - | 1271231..1271632 (-) | 402 | WP_040940795.1 | SymE family type I addiction module toxin | - |
| JH300_RS05350 (JH300_05320) | coaE | 1272164..1272787 (-) | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| JH300_RS05355 (JH300_05325) | - | 1272801..1273664 (-) | 864 | WP_057671659.1 | A24 family peptidase | - |
| JH300_RS05360 (JH300_05330) | pilC | 1273671..1274933 (-) | 1263 | WP_057671824.1 | type II secretion system F family protein | Machinery gene |
| JH300_RS05365 (JH300_05335) | pilA | 1275275..1275703 (+) | 429 | WP_057671660.1 | pilin | Machinery gene |
| JH300_RS05370 (JH300_05340) | pilB | 1275839..1277569 (+) | 1731 | WP_057671826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH300_RS05380 (JH300_05350) | pilR | 1277988..1279382 (-) | 1395 | WP_057671663.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH300_RS05385 (JH300_05355) | - | 1279591..1281201 (-) | 1611 | WP_057671664.1 | HAMP domain-containing sensor histidine kinase | - |
| JH300_RS05390 (JH300_05360) | sucC | 1281435..1282604 (+) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH300_RS05395 (JH300_05365) | sucD | 1282629..1283504 (+) | 876 | WP_057671668.1 | succinate--CoA ligase subunit alpha | - |
| JH300_RS05400 (JH300_05370) | - | 1283608..1284018 (+) | 411 | WP_029217117.1 | DNA-binding protein | - |
| JH300_RS05405 (JH300_05375) | - | 1284022..1284324 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50279.66 Da Isoelectric Point: 6.5131
>NTDB_id=523714 JH300_RS05380 WP_057671663.1 1277988..1279382(-) (pilR) [Xanthomonas campestris pv. campestris strain 11085]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=523714 JH300_RS05380 WP_057671663.1 1277988..1279382(-) (pilR) [Xanthomonas campestris pv. campestris strain 11085]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTACTTACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAGCGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTACTTACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAGCGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.353 |
100 |
0.494 |