Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | JH307_RS06230 | Genome accession | NZ_CP066969 |
| Coordinates | 1385083..1386477 (-) | Length | 464 a.a. |
| NCBI ID | WP_070690014.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris strain 10-16 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1301099..1398707 | 1385083..1386477 | within | 0 |
Gene organization within MGE regions
Location: 1301099..1398707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH307_RS05895 (JH307_05890) | prpB | 1302653..1303549 (+) | 897 | WP_011036231.1 | methylisocitrate lyase | - |
| JH307_RS05900 (JH307_05895) | prpC | 1303625..1304779 (+) | 1155 | WP_011036232.1 | 2-methylcitrate synthase | - |
| JH307_RS05905 (JH307_05900) | acnD | 1304971..1307565 (+) | 2595 | WP_076039426.1 | Fe/S-dependent 2-methylisocitrate dehydratase AcnD | - |
| JH307_RS05910 (JH307_05905) | - | 1307661..1307894 (+) | 234 | WP_016944831.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JH307_RS05915 (JH307_05910) | - | 1307891..1308208 (+) | 318 | WP_076039425.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JH307_RS05920 (JH307_05915) | prpF | 1308302..1309501 (+) | 1200 | WP_076039424.1 | 2-methylaconitate cis-trans isomerase PrpF | - |
| JH307_RS05925 (JH307_05920) | - | 1309756..1311972 (+) | 2217 | WP_070692164.1 | TonB-dependent receptor | - |
| JH307_RS05930 (JH307_05925) | - | 1312046..1313047 (+) | 1002 | WP_197708511.1 | nucleoside hydrolase | - |
| JH307_RS05935 (JH307_05930) | - | 1313815..1318731 (+) | 4917 | WP_274509556.1 | alpha-2-macroglobulin | - |
| JH307_RS05940 (JH307_05935) | - | 1319089..1319556 (-) | 468 | WP_070692167.1 | transposase | - |
| JH307_RS05945 (JH307_05940) | - | 1320328..1323414 (+) | 3087 | WP_274509805.1 | TonB-dependent receptor | - |
| JH307_RS05950 (JH307_05945) | - | 1323518..1324465 (+) | 948 | WP_162277205.1 | glycerophosphodiester phosphodiesterase family protein | - |
| JH307_RS05955 (JH307_05950) | - | 1324535..1325386 (+) | 852 | WP_337998745.1 | CPBP family glutamic-type intramembrane protease | - |
| JH307_RS05960 (JH307_05955) | pbpC | 1325491..1327914 (+) | 2424 | WP_274509557.1 | penicillin-binding protein 1C | - |
| JH307_RS05965 (JH307_05960) | - | 1328544..1329104 (-) | 561 | WP_076039417.1 | ferritin-like domain-containing protein | - |
| JH307_RS05970 (JH307_05965) | - | 1329147..1329629 (-) | 483 | WP_014506917.1 | peroxiredoxin | - |
| JH307_RS05975 (JH307_05970) | - | 1329790..1330266 (+) | 477 | WP_011036247.1 | Hsp20/alpha crystallin family protein | - |
| JH307_RS05980 (JH307_05975) | - | 1330409..1331299 (+) | 891 | WP_014506919.1 | DnaJ C-terminal domain-containing protein | - |
| JH307_RS05985 (JH307_05980) | pilH | 1331616..1332002 (+) | 387 | WP_011036249.1 | twitching motility response regulator PilH | - |
| JH307_RS05990 (JH307_05985) | hflK | 1332934..1334076 (+) | 1143 | WP_014506921.1 | FtsH protease activity modulator HflK | - |
| JH307_RS05995 (JH307_05990) | - | 1334076..1334939 (+) | 864 | WP_011036251.1 | protease modulator HflC | - |
| JH307_RS06000 (JH307_05995) | - | 1335145..1335330 (+) | 186 | WP_076039416.1 | DUF2065 family protein | - |
| JH307_RS06005 (JH307_06000) | - | 1335714..1337006 (+) | 1293 | WP_011036253.1 | adenylosuccinate synthase | - |
| JH307_RS06010 (JH307_06005) | - | 1337174..1339846 (+) | 2673 | WP_274509558.1 | M1 family metallopeptidase | - |
| JH307_RS06015 (JH307_06010) | - | 1339930..1340781 (+) | 852 | WP_274509559.1 | hypothetical protein | - |
| JH307_RS06020 (JH307_06015) | - | 1340979..1341170 (-) | 192 | Protein_1146 | XVIPCD domain-containing protein | - |
| JH307_RS06025 (JH307_06020) | - | 1341239..1342341 (+) | 1103 | Protein_1147 | IS3-like element IS1404 family transposase | - |
| JH307_RS06030 (JH307_06025) | - | 1342378..1342605 (+) | 228 | Protein_1148 | type IV secretory system conjugative DNA transfer family protein | - |
| JH307_RS06035 (JH307_06030) | - | 1342650..1343111 (+) | 462 | WP_043889145.1 | hypothetical protein | - |
| JH307_RS06040 (JH307_06035) | - | 1343137..1343595 (+) | 459 | WP_084217866.1 | hypothetical protein | - |
| JH307_RS06045 (JH307_06040) | - | 1343592..1347275 (+) | 3684 | WP_274509564.1 | peptidoglycan-binding protein | - |
| JH307_RS06050 (JH307_06045) | - | 1347579..1348877 (+) | 1299 | WP_274509565.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| JH307_RS06055 (JH307_06050) | - | 1348874..1351087 (+) | 2214 | WP_274509566.1 | peptidase domain-containing ABC transporter | - |
| JH307_RS06060 | - | 1351197..1351997 (+) | 801 | WP_228441325.1 | hypothetical protein | - |
| JH307_RS06065 (JH307_06060) | - | 1352038..1352562 (+) | 525 | WP_274509567.1 | hypothetical protein | - |
| JH307_RS06070 (JH307_06065) | - | 1352679..1353263 (+) | 585 | WP_274509568.1 | hypothetical protein | - |
| JH307_RS06075 (JH307_06070) | - | 1353364..1354641 (-) | 1278 | WP_274509569.1 | MFS transporter | - |
| JH307_RS06080 (JH307_06075) | - | 1354704..1355135 (-) | 432 | WP_274509570.1 | toxin-activating lysine-acyltransferase | - |
| JH307_RS06085 (JH307_06080) | - | 1355125..1356939 (-) | 1815 | WP_274509571.1 | protein adenylyltransferase SelO family protein | - |
| JH307_RS21720 | - | 1357461..1357997 (+) | 537 | Protein_1160 | MobA/MobL family protein | - |
| JH307_RS21725 | - | 1357896..1358117 (-) | 222 | Protein_1161 | hypothetical protein | - |
| JH307_RS06095 (JH307_06090) | - | 1359493..1359839 (+) | 347 | Protein_1162 | DUF1629 domain-containing protein | - |
| JH307_RS06100 (JH307_06095) | - | 1360964..1361440 (-) | 477 | WP_274509573.1 | Mov34/MPN/PAD-1 family protein | - |
| JH307_RS06105 (JH307_06100) | - | 1361428..1363062 (-) | 1635 | WP_274509574.1 | ThiF family adenylyltransferase | - |
| JH307_RS06110 (JH307_06105) | - | 1363059..1364195 (-) | 1137 | WP_274509575.1 | CBASS cGAMP synthase | - |
| JH307_RS06115 (JH307_06110) | - | 1364205..1365191 (-) | 987 | WP_274509576.1 | CBASS cGAMP-activated phospholipase | - |
| JH307_RS06120 (JH307_06115) | - | 1365198..1365422 (-) | 225 | WP_274509577.1 | DUF2188 domain-containing protein | - |
| JH307_RS06125 (JH307_06120) | - | 1365694..1366086 (+) | 393 | WP_274509578.1 | helix-turn-helix transcriptional regulator | - |
| JH307_RS06130 (JH307_06125) | - | 1366089..1366958 (+) | 870 | WP_274509579.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JH307_RS06135 (JH307_06130) | - | 1367422..1367793 (+) | 372 | WP_076038482.1 | hypothetical protein | - |
| JH307_RS06140 | - | 1367926..1368267 (+) | 342 | WP_228441887.1 | hypothetical protein | - |
| JH307_RS06145 (JH307_06140) | - | 1368358..1368531 (+) | 174 | WP_228441890.1 | hypothetical protein | - |
| JH307_RS06150 (JH307_06145) | - | 1368716..1369111 (+) | 396 | WP_011038225.1 | hypothetical protein | - |
| JH307_RS06155 (JH307_06150) | - | 1369202..1369594 (+) | 393 | WP_076038484.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH307_RS06160 (JH307_06155) | glgX | 1370127..1372256 (-) | 2130 | WP_016945001.1 | glycogen debranching protein GlgX | - |
| JH307_RS06165 (JH307_06160) | rimK | 1372749..1373624 (+) | 876 | WP_070689999.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH307_RS06170 (JH307_06165) | - | 1374274..1374951 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| JH307_RS06175 (JH307_06170) | - | 1374944..1376278 (+) | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| JH307_RS06180 (JH307_06175) | - | 1376421..1376912 (-) | 492 | WP_076038486.1 | GNAT family N-acetyltransferase | - |
| JH307_RS06185 (JH307_06180) | - | 1376909..1377199 (-) | 291 | WP_011038219.1 | DUF1778 domain-containing protein | - |
| JH307_RS06190 (JH307_06185) | - | 1377274..1377675 (-) | 402 | WP_274509580.1 | SymE family type I addiction module toxin | - |
| JH307_RS06195 (JH307_06190) | coaE | 1378207..1378830 (-) | 624 | WP_076038488.1 | dephospho-CoA kinase | - |
| JH307_RS06200 (JH307_06195) | - | 1378844..1379707 (-) | 864 | WP_040940797.1 | A24 family peptidase | - |
| JH307_RS06205 (JH307_06200) | pilC | 1379714..1380970 (-) | 1257 | WP_076037882.1 | type II secretion system F family protein | Machinery gene |
| JH307_RS06210 (JH307_06205) | pilA/pilAI | 1381314..1381721 (+) | 408 | WP_076038490.1 | pilin | Machinery gene |
| JH307_RS06215 (JH307_06210) | pilB | 1381903..1383609 (+) | 1707 | WP_206419582.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH307_RS06220 (JH307_06215) | - | 1383792..1384529 (-) | 738 | WP_070690009.1 | zeta toxin family protein | - |
| JH307_RS06225 (JH307_06220) | - | 1384529..1384891 (-) | 363 | WP_217694196.1 | hypothetical protein | - |
| JH307_RS06230 (JH307_06225) | pilR | 1385083..1386477 (-) | 1395 | WP_070690014.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH307_RS06235 (JH307_06230) | - | 1386686..1388296 (-) | 1611 | WP_014508702.1 | HAMP domain-containing sensor histidine kinase | - |
| JH307_RS06240 (JH307_06235) | sucC | 1388530..1389699 (+) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH307_RS06245 (JH307_06240) | sucD | 1389724..1390599 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH307_RS06250 (JH307_06245) | - | 1390703..1391113 (+) | 411 | WP_029628876.1 | DNA-binding protein | - |
| JH307_RS06255 (JH307_06250) | - | 1391117..1391419 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JH307_RS06260 (JH307_06255) | - | 1391419..1393074 (+) | 1656 | WP_274509582.1 | NAD+ synthase | - |
| JH307_RS06265 (JH307_06260) | - | 1393068..1394051 (-) | 984 | WP_274509583.1 | hypothetical protein | - |
| JH307_RS06270 (JH307_06265) | - | 1394502..1395383 (-) | 882 | WP_011038204.1 | outer membrane protein assembly factor BamD | - |
| JH307_RS06275 (JH307_06270) | rluD | 1395506..1396501 (+) | 996 | WP_076038496.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| JH307_RS06280 (JH307_06275) | pgeF | 1396503..1397303 (+) | 801 | WP_274509584.1 | peptidoglycan editing factor PgeF | - |
| JH307_RS06285 (JH307_06280) | - | 1397324..1397830 (+) | 507 | WP_076037045.1 | DUF4166 domain-containing protein | - |
| JH307_RS06290 (JH307_06285) | - | 1397817..1398236 (+) | 420 | WP_011038200.1 | thiol-disulfide oxidoreductase DCC family protein | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50265.64 Da Isoelectric Point: 6.3588
>NTDB_id=523700 JH307_RS06230 WP_070690014.1 1385083..1386477(-) (pilR) [Xanthomonas campestris strain 10-16]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=523700 JH307_RS06230 WP_070690014.1 1385083..1386477(-) (pilR) [Xanthomonas campestris strain 10-16]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCAGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCAGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.138 |
100 |
0.491 |