Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | JH257_RS05280 | Genome accession | NZ_CP066947 |
| Coordinates | 1249882..1251276 (-) | Length | 464 a.a. |
| NCBI ID | WP_043921909.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 0792 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1160904..1256218 | 1249882..1251276 | within | 0 |
Gene organization within MGE regions
Location: 1160904..1256218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH257_RS04905 (JH257_04905) | - | 1161233..1162129 (-) | 897 | Protein_950 | ATP-binding protein | - |
| JH257_RS04910 | - | 1162126..1165332 (-) | 3207 | WP_274375510.1 | TerB N-terminal domain-containing protein | - |
| JH257_RS04915 (JH257_04915) | - | 1165508..1168081 (+) | 2574 | WP_081020869.1 | AAA family ATPase | - |
| JH257_RS04920 (JH257_04920) | - | 1168193..1169269 (-) | 1077 | WP_274375511.1 | hypothetical protein | - |
| JH257_RS04925 (JH257_04925) | - | 1169807..1171198 (-) | 1392 | WP_249453410.1 | site-specific integrase | - |
| JH257_RS04930 (JH257_04930) | - | 1171872..1173016 (+) | 1145 | WP_087942071.1 | IS3 family transposase | - |
| JH257_RS04935 (JH257_04935) | - | 1173329..1175017 (+) | 1689 | WP_233362759.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JH257_RS04940 (JH257_04940) | - | 1175029..1175700 (+) | 672 | WP_274375512.1 | DUF1629 domain-containing protein | - |
| JH257_RS04945 (JH257_04945) | - | 1175741..1176379 (+) | 639 | WP_233362757.1 | DUF1629 domain-containing protein | - |
| JH257_RS04950 (JH257_04950) | - | 1176427..1180029 (+) | 3603 | WP_274375513.1 | peptidoglycan-binding protein | - |
| JH257_RS04955 (JH257_04955) | - | 1180265..1181563 (+) | 1299 | WP_043877774.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| JH257_RS04960 (JH257_04960) | - | 1181560..1183776 (+) | 2217 | WP_274375514.1 | peptidase domain-containing ABC transporter | - |
| JH257_RS04965 (JH257_04965) | - | 1183879..1184691 (+) | 813 | WP_274375515.1 | pesticin C-terminus-like muramidase | - |
| JH257_RS04970 (JH257_04970) | - | 1184721..1185215 (+) | 495 | WP_274375516.1 | hypothetical protein | - |
| JH257_RS04975 (JH257_04980) | - | 1185415..1186185 (+) | 771 | WP_274375517.1 | hypothetical protein | - |
| JH257_RS04980 (JH257_04985) | - | 1186252..1186890 (+) | 639 | WP_139328711.1 | hypothetical protein | - |
| JH257_RS04985 (JH257_04990) | - | 1186934..1187458 (+) | 525 | WP_076038855.1 | hypothetical protein | - |
| JH257_RS04990 (JH257_04995) | - | 1187575..1187757 (+) | 183 | WP_274375518.1 | hypothetical protein | - |
| JH257_RS04995 (JH257_05000) | - | 1187864..1189231 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH257_RS05000 (JH257_05005) | - | 1189376..1190743 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH257_RS05005 (JH257_05010) | - | 1191160..1192527 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH257_RS05010 (JH257_05015) | - | 1192944..1194311 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH257_RS05015 (JH257_05020) | - | 1194852..1196129 (-) | 1278 | WP_131084748.1 | ABC transporter permease | - |
| JH257_RS05020 (JH257_05025) | - | 1196192..1196623 (-) | 432 | WP_274375519.1 | toxin-activating lysine-acyltransferase | - |
| JH257_RS05025 (JH257_05030) | - | 1196613..1198427 (-) | 1815 | WP_274375520.1 | protein adenylyltransferase SelO family protein | - |
| JH257_RS22495 | - | 1199022..1199483 (+) | 462 | Protein_975 | MobA/MobL family protein | - |
| JH257_RS22500 | - | 1199376..1199600 (-) | 225 | WP_337998625.1 | hypothetical protein | - |
| JH257_RS05035 (JH257_05040) | - | 1200671..1201771 (-) | 1101 | WP_076038478.1 | XRE family transcriptional regulator | - |
| JH257_RS05040 (JH257_05045) | - | 1201768..1202364 (-) | 597 | WP_076038479.1 | hypothetical protein | - |
| JH257_RS05045 (JH257_05050) | - | 1202694..1204243 (+) | 1550 | Protein_979 | site-specific integrase | - |
| JH257_RS05050 (JH257_05055) | - | 1204324..1204752 (+) | 429 | WP_144410827.1 | hypothetical protein | - |
| JH257_RS05055 (JH257_05060) | - | 1205138..1205926 (-) | 789 | WP_144410826.1 | hypothetical protein | - |
| JH257_RS05060 (JH257_05065) | - | 1206525..1207345 (+) | 821 | Protein_982 | IS3-like element ISXca1 family transposase | - |
| JH257_RS05065 (JH257_05070) | - | 1207414..1208516 (+) | 1103 | WP_100101058.1 | IS3-like element IS1404 family transposase | - |
| JH257_RS05070 (JH257_05075) | - | 1208991..1209575 (+) | 585 | WP_274375522.1 | hypothetical protein | - |
| JH257_RS05075 (JH257_05080) | - | 1209813..1210052 (+) | 240 | WP_274375523.1 | hypothetical protein | - |
| JH257_RS05080 | - | 1210335..1210562 (+) | 228 | Protein_986 | DNA repair protein RadC | - |
| JH257_RS05085 (JH257_05090) | - | 1210679..1211659 (-) | 981 | WP_012438063.1 | IS5-like element IS1646 family transposase | - |
| JH257_RS05090 (JH257_05095) | - | 1211747..1212061 (+) | 315 | Protein_988 | JAB domain-containing protein | - |
| JH257_RS05095 (JH257_05100) | - | 1212134..1213288 (+) | 1155 | WP_274339168.1 | XRE family transcriptional regulator | - |
| JH257_RS05100 (JH257_05105) | - | 1213769..1214347 (+) | 579 | Protein_990 | thermonuclease family protein | - |
| JH257_RS05105 (JH257_05110) | - | 1214481..1215122 (+) | 642 | WP_274375524.1 | DUF1629 domain-containing protein | - |
| JH257_RS05110 (JH257_05115) | - | 1215159..1219199 (+) | 4041 | WP_274375525.1 | hypothetical protein | - |
| JH257_RS05115 (JH257_05120) | - | 1219239..1219889 (+) | 651 | WP_274375526.1 | hypothetical protein | - |
| JH257_RS05120 (JH257_05125) | - | 1220606..1221820 (-) | 1215 | WP_011035386.1 | IS4-like element IS1481A family transposase | - |
| JH257_RS05125 (JH257_05130) | - | 1221888..1222742 (-) | 855 | WP_274375527.1 | caspase family protein | - |
| JH257_RS05130 (JH257_05135) | - | 1222739..1223107 (-) | 369 | WP_274339164.1 | TIR domain-containing protein | - |
| JH257_RS05135 (JH257_05140) | - | 1223274..1224641 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH257_RS05150 (JH257_05150) | - | 1226271..1227872 (+) | 1602 | WP_337998626.1 | MobA/MobL family protein | - |
| JH257_RS05155 (JH257_05155) | - | 1227817..1228311 (-) | 495 | WP_274375528.1 | transcriptional regulator | - |
| JH257_RS05160 (JH257_05160) | - | 1228525..1229505 (-) | 981 | WP_012438063.1 | IS5-like element IS1646 family transposase | - |
| JH257_RS05165 (JH257_05165) | - | 1229509..1229763 (-) | 255 | WP_274375529.1 | DUF6516 family protein | - |
| JH257_RS05170 (JH257_05170) | - | 1229828..1230169 (-) | 342 | WP_070689991.1 | hypothetical protein | - |
| JH257_RS05175 (JH257_05175) | - | 1230541..1231755 (+) | 1215 | WP_011035386.1 | IS4-like element IS1481A family transposase | - |
| JH257_RS05180 (JH257_05180) | - | 1232225..1232596 (+) | 372 | WP_274375530.1 | hypothetical protein | - |
| JH257_RS05185 | - | 1232729..1233070 (+) | 342 | WP_228441887.1 | hypothetical protein | - |
| JH257_RS05190 (JH257_05190) | - | 1233188..1233334 (+) | 147 | WP_116889157.1 | hypothetical protein | - |
| JH257_RS05195 (JH257_05195) | - | 1233519..1233914 (+) | 396 | WP_274375531.1 | hypothetical protein | - |
| JH257_RS05200 (JH257_05200) | - | 1234005..1234397 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH257_RS05205 (JH257_05205) | glgX | 1234922..1237051 (-) | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| JH257_RS05210 (JH257_05210) | rimK | 1237544..1238419 (+) | 876 | WP_011038222.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH257_RS05215 (JH257_05215) | - | 1239069..1239746 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| JH257_RS05220 (JH257_05220) | - | 1239739..1241073 (+) | 1335 | WP_227971331.1 | HAMP domain-containing sensor histidine kinase | - |
| JH257_RS05225 (JH257_05225) | - | 1241216..1241707 (-) | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | - |
| JH257_RS05230 (JH257_05230) | - | 1241704..1241994 (-) | 291 | WP_274375532.1 | DUF1778 domain-containing protein | - |
| JH257_RS05235 (JH257_05235) | - | 1242070..1242471 (-) | 402 | WP_076037054.1 | SymE family type I addiction module toxin | - |
| JH257_RS05240 (JH257_05240) | coaE | 1243003..1243626 (-) | 624 | WP_040940796.1 | dephospho-CoA kinase | - |
| JH257_RS05245 (JH257_05245) | - | 1243640..1244503 (-) | 864 | WP_057671659.1 | A24 family peptidase | - |
| JH257_RS05250 (JH257_05250) | pilC | 1244510..1245772 (-) | 1263 | WP_057671824.1 | type II secretion system F family protein | Machinery gene |
| JH257_RS05255 (JH257_05255) | pilA | 1246114..1246542 (+) | 429 | WP_057671660.1 | pilin | Machinery gene |
| JH257_RS05260 (JH257_05260) | pilB | 1246678..1248408 (+) | 1731 | WP_274375747.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH257_RS05265 (JH257_05265) | - | 1248591..1248806 (-) | 216 | WP_274375533.1 | hypothetical protein | - |
| JH257_RS05270 (JH257_05270) | - | 1248888..1249328 (-) | 441 | WP_274375534.1 | hypothetical protein | - |
| JH257_RS05275 (JH257_05275) | - | 1249328..1249690 (-) | 363 | WP_217694196.1 | hypothetical protein | - |
| JH257_RS05280 (JH257_05280) | pilR | 1249882..1251276 (-) | 1395 | WP_043921909.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH257_RS05285 (JH257_05285) | - | 1251485..1253095 (-) | 1611 | WP_011038210.1 | HAMP domain-containing sensor histidine kinase | - |
| JH257_RS05290 (JH257_05290) | sucC | 1253329..1254498 (+) | 1170 | WP_012437609.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH257_RS05295 (JH257_05295) | sucD | 1254523..1255398 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH257_RS05300 (JH257_05300) | - | 1255502..1255912 (+) | 411 | WP_029628876.1 | DNA-binding protein | - |
| JH257_RS05305 (JH257_05305) | - | 1255916..1256218 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50279.66 Da Isoelectric Point: 6.3588
>NTDB_id=523482 JH257_RS05280 WP_043921909.1 1249882..1251276(-) (pilR) [Xanthomonas campestris pv. campestris strain 0792]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=523482 JH257_RS05280 WP_043921909.1 1249882..1251276(-) (pilR) [Xanthomonas campestris pv. campestris strain 0792]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATAGTCGGCGAATCCGGTGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AAAAGGGCAGTTTTACCGGCGCGCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGAT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATAATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATAGTCGGCGAATCCGGTGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AAAAGGGCAGTTTTACCGGCGCGCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGAT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATAATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
48.922 |
100 |
0.489 |