Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH256_RS05665 Genome accession   NZ_CP066934
Coordinates   1331895..1333289 (-) Length   464 a.a.
NCBI ID   WP_221261830.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 08290     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326895..1338289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH256_RS05640 (JH256_05605) pilC 1327141..1328397 (-) 1257 WP_011038215.1 type II secretion system F family protein Machinery gene
  JH256_RS05645 (JH256_05610) pilE 1328724..1329164 (+) 441 WP_011038214.1 pilin Machinery gene
  JH256_RS05650 (JH256_05615) - 1329244..1329678 (+) 435 WP_011038213.1 pilin -
  JH256_RS05655 (JH256_05620) pilB 1329743..1331476 (+) 1734 WP_011038212.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH256_RS05665 (JH256_05630) pilR 1331895..1333289 (-) 1395 WP_221261830.1 sigma-54 dependent transcriptional regulator Regulator
  JH256_RS05670 (JH256_05635) - 1333498..1335108 (-) 1611 WP_011038210.1 HAMP domain-containing sensor histidine kinase -
  JH256_RS05675 (JH256_05640) sucC 1335342..1336511 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH256_RS05680 (JH256_05645) sucD 1336536..1337411 (+) 876 WP_057671668.1 succinate--CoA ligase subunit alpha -
  JH256_RS05685 (JH256_05650) - 1337515..1337925 (+) 411 WP_029217117.1 DNA-binding protein -
  JH256_RS05690 (JH256_05655) - 1337929..1338231 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50283.69 Da        Isoelectric Point: 6.3587

>NTDB_id=523374 JH256_RS05665 WP_221261830.1 1331895..1333289(-) (pilR) [Xanthomonas campestris pv. campestris strain 08290]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPLEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523374 JH256_RS05665 WP_221261830.1 1331895..1333289(-) (pilR) [Xanthomonas campestris pv. campestris strain 08290]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCTGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGATCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATCCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCACCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491