Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilR   Type   Regulator
Locus tag   JH314_RS15975 Genome accession   NZ_CP066925
Coordinates   3596407..3597801 (+) Length   464 a.a.
NCBI ID   WP_274339070.1    Uniprot ID   -
Organism   Xanthomonas campestris strain CFBP5824     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 3591407..3602801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH314_RS15950 (JH314_15900) - 3591465..3591767 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JH314_RS15955 (JH314_15905) - 3591771..3592181 (-) 411 WP_029628876.1 DNA-binding protein -
  JH314_RS15960 (JH314_15910) sucD 3592285..3593160 (-) 876 WP_274339069.1 succinate--CoA ligase subunit alpha -
  JH314_RS15965 (JH314_15915) sucC 3593185..3594354 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH314_RS15970 (JH314_15920) - 3594588..3596198 (+) 1611 WP_116901781.1 HAMP domain-containing sensor histidine kinase -
  JH314_RS15975 (JH314_15925) pilR 3596407..3597801 (+) 1395 WP_274339070.1 sigma-54 dependent transcriptional regulator Regulator
  JH314_RS15980 (JH314_15930) - 3597999..3598355 (+) 357 WP_139328384.1 hypothetical protein -
  JH314_RS15985 (JH314_15935) - 3598355..3599092 (+) 738 WP_274339071.1 zeta toxin family protein -
  JH314_RS15990 (JH314_15940) pilB 3599275..3601008 (-) 1734 WP_274339072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH314_RS15995 (JH314_15945) - 3601273..3601722 (-) 450 WP_274339073.1 pilin -

Sequence


Protein


Download         Length: 464 a.a.        Molecular weight: 50273.66 Da        Isoelectric Point: 6.4414

>NTDB_id=523242 JH314_RS15975 WP_274339070.1 3596407..3597801(+) (pilR) [Xanthomonas campestris strain CFBP5824]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523242 JH314_RS15975 WP_274339070.1 3596407..3597801(+) (pilR) [Xanthomonas campestris strain CFBP5824]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCAAGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCATTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCCCCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCACGC
AGCCAGGCACCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAGCAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCACCGAATCGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631

  pilR Acinetobacter baumannii strain A118

48.922

100

0.489