Detailed information
Overview
| Name | pilR | Type | Regulator |
| Locus tag | JH314_RS15975 | Genome accession | NZ_CP066925 |
| Coordinates | 3596407..3597801 (+) | Length | 464 a.a. |
| NCBI ID | WP_274339070.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris strain CFBP5824 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3591407..3602801
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH314_RS15950 (JH314_15900) | - | 3591465..3591767 (-) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JH314_RS15955 (JH314_15905) | - | 3591771..3592181 (-) | 411 | WP_029628876.1 | DNA-binding protein | - |
| JH314_RS15960 (JH314_15910) | sucD | 3592285..3593160 (-) | 876 | WP_274339069.1 | succinate--CoA ligase subunit alpha | - |
| JH314_RS15965 (JH314_15915) | sucC | 3593185..3594354 (-) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH314_RS15970 (JH314_15920) | - | 3594588..3596198 (+) | 1611 | WP_116901781.1 | HAMP domain-containing sensor histidine kinase | - |
| JH314_RS15975 (JH314_15925) | pilR | 3596407..3597801 (+) | 1395 | WP_274339070.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH314_RS15980 (JH314_15930) | - | 3597999..3598355 (+) | 357 | WP_139328384.1 | hypothetical protein | - |
| JH314_RS15985 (JH314_15935) | - | 3598355..3599092 (+) | 738 | WP_274339071.1 | zeta toxin family protein | - |
| JH314_RS15990 (JH314_15940) | pilB | 3599275..3601008 (-) | 1734 | WP_274339072.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH314_RS15995 (JH314_15945) | - | 3601273..3601722 (-) | 450 | WP_274339073.1 | pilin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50273.66 Da Isoelectric Point: 6.4414
>NTDB_id=523242 JH314_RS15975 WP_274339070.1 3596407..3597801(+) (pilR) [Xanthomonas campestris strain CFBP5824]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=523242 JH314_RS15975 WP_274339070.1 3596407..3597801(+) (pilR) [Xanthomonas campestris strain CFBP5824]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCAAGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCATTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCCCCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCACGC
AGCCAGGCACCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAGCAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCACCGAATCGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCAAGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCATTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCCCCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCACGC
AGCCAGGCACCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAGCAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCACCGAATCGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.283 |
99.784 |
0.631 |
| pilR | Acinetobacter baumannii strain A118 |
48.922 |
100 |
0.489 |