Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH280_RS16305 Genome accession   NZ_CP066922
Coordinates   3748395..3749789 (+) Length   464 a.a.
NCBI ID   WP_042594919.1    Uniprot ID   A0AAJ3CC33
Organism   Xanthomonas campestris strain 5053     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3743395..3754789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH280_RS16290 (JH280_16230) sucD 3744273..3745148 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH280_RS16295 (JH280_16235) sucC 3745173..3746342 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH280_RS16300 (JH280_16240) - 3746576..3748186 (+) 1611 WP_274347445.1 PAS domain-containing sensor histidine kinase -
  JH280_RS16305 (JH280_16245) pilR 3748395..3749789 (+) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  JH280_RS16315 (JH280_16255) pilB 3750208..3751941 (-) 1734 WP_228431843.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH280_RS16320 (JH280_16260) - 3752045..3752683 (-) 639 WP_076054160.1 methionine biosynthesis protein MetW -
  JH280_RS16325 (JH280_16265) - 3752676..3753722 (-) 1047 WP_081390738.1 glycosyltransferase family 2 protein -
  JH280_RS16330 (JH280_16270) - 3753719..3754513 (-) 795 WP_076057322.1 glycosyltransferase family A protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50293.69 Da        Isoelectric Point: 6.5131

>NTDB_id=523206 JH280_RS16305 WP_042594919.1 3748395..3749789(+) (pilR) [Xanthomonas campestris strain 5053]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523206 JH280_RS16305 WP_042594919.1 3748395..3749789(+) (pilR) [Xanthomonas campestris strain 5053]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTCTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCACCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCACATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAAATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGTGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCACGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCGCTCGA
TGCCCTCAACCAATACGGCTTTCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGTGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGTGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491