Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JGZ15_RS04065 Genome accession   NZ_CP066884
Coordinates   915275..915904 (+) Length   209 a.a.
NCBI ID   WP_200361216.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP080     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 910275..920904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ15_RS04040 (JGZ15_04040) - 911188..912186 (-) 999 WP_200361215.1 aromatic acid exporter family protein -
  JGZ15_RS04045 (JGZ15_04045) map 912283..913044 (+) 762 WP_014613478.1 type I methionyl aminopeptidase -
  JGZ15_RS04050 (JGZ15_04050) - 913142..913531 (+) 390 WP_014613479.1 hypothetical protein -
  JGZ15_RS04055 (JGZ15_04055) liaF 913544..914245 (+) 702 WP_200265330.1 cell wall-active antibiotics response protein LiaF -
  JGZ15_RS04060 (JGZ15_04060) vraS 914242..915285 (+) 1044 WP_014613481.1 sensor histidine kinase Regulator
  JGZ15_RS04065 (JGZ15_04065) vraR 915275..915904 (+) 630 WP_200361216.1 response regulator transcription factor Regulator
  JGZ15_RS04070 (JGZ15_04070) - 916471..917055 (-) 585 WP_200361217.1 carbonic anhydrase -
  JGZ15_RS04075 (JGZ15_04075) - 917088..918425 (-) 1338 WP_015729387.1 YihY/virulence factor BrkB family protein -
  JGZ15_RS04080 (JGZ15_04080) - 918641..918928 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  JGZ15_RS04085 (JGZ15_04085) - 918936..919394 (-) 459 WP_014613486.1 low molecular weight protein-tyrosine-phosphatase -
  JGZ15_RS04090 (JGZ15_04090) - 919528..919731 (+) 204 WP_014613487.1 DUF1128 family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23512.22 Da        Isoelectric Point: 5.3798

>NTDB_id=522940 JGZ15_RS04065 WP_200361216.1 915275..915904(+) (vraR) [Staphylococcus pseudintermedius strain HSP080]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKRRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=522940 JGZ15_RS04065 WP_200361216.1 915275..915904(+) (vraR) [Staphylococcus pseudintermedius strain HSP080]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATTGGGATTTCAAGTTATTTATCAACACAACCCGA
TATCGAAGTAGTGGGAGAAGGTGCCTCAGGTAAAGAAGCAATCGCAAAAGCCCACGAATTGAAACCAGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGCGTTGAAGCGACAATGCAAATTAAGAAAGATTTGCCACATATTAAAGTCGTG
ATGCTGACGAGTTATATTGAAGATAAAGAAGTGTATCGAGCGTTAGATGCCGGTGTCGATAGTTACATTTTAAAAACGAC
GAGTGCGAATGATATTGCGGAAGCTGTACGTAAAACGAGTCGTGGTGAGTCTGTGTTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCGGCGTGCGGAGTTATATGAATTGTTGACTGAGCGCGAGATGGAAATTTTGTTGTTGATTTCA
AAAGGCTATTCGAACCAAGAGATTGCGAGTGCATCACATATTACGATTAAGACAGTGAAGACGCATGTGAGTAATATTTT
AAGTAAGCTTGAGGTGCAGGATCGTACGCAAGCGGTTATTTATGCTTTCCAACACGGCTTGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.823

100

0.928
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.388