Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   U471_RS00140 Genome accession   NC_022653
Coordinates   30086..30682 (+) Length   198 a.a.
NCBI ID   WP_003150697.1    Uniprot ID   A7Z0E4
Organism   Bacillus amyloliquefaciens CC178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25086..35682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS00120 (U471_00190) - 26433..26945 (-) 513 WP_049753464.1 cysteine hydrolase family protein -
  U471_RS00125 (U471_00200) tadA 27067..27549 (+) 483 WP_007615141.1 tRNA adenosine(34) deaminase TadA -
  U471_RS00130 (U471_00220) dnaX 28032..29723 (+) 1692 WP_011996162.1 DNA polymerase III subunit gamma/tau -
  U471_RS00135 (U471_00230) - 29748..30071 (+) 324 WP_007408754.1 YbaB/EbfC family nucleoid-associated protein -
  U471_RS00140 (U471_00240) recR 30086..30682 (+) 597 WP_003150697.1 recombination protein RecR Machinery gene
  U471_RS00145 (U471_00250) - 30701..30925 (+) 225 WP_007408755.1 YaaL family protein -
  U471_RS00150 (U471_00260) - 30986..31249 (+) 264 WP_003150686.1 pro-sigmaK processing inhibitor BofA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21990.53 Da        Isoelectric Point: 5.3504

>NTDB_id=52284 U471_RS00140 WP_003150697.1 30086..30682(+) (recR) [Bacillus amyloliquefaciens CC178]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=52284 U471_RS00140 WP_003150697.1 30086..30682(+) (recR) [Bacillus amyloliquefaciens CC178]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACACAGTATTGGATTTTGCTAAGGCGCTTGTCAATGCGAAGCGGAATC
TGACATATTGCTCGATTTGCGGACATATAACAGATCAAGACCCTTGTTATATATGTGAGGACACAAGAAGGGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAGGATGTGATCGCAATGGAGAAAATGAAGGAATATAACGGCCAGTACCATGTTCT
TCACGGCGCGATTTCACCAATGGACGGCATCGGCCCGGAGGATATTAAGATTCCGGAGCTGCTGAAACGTCTTCAGGATG
ATCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGTCTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCTCTTGAAGGAAGACGTGAATTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52