Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   K2224_RS19675 Genome accession   NZ_CP081496
Coordinates   4447599..4447913 (+) Length   104 a.a.
NCBI ID   WP_313904802.1    Uniprot ID   -
Organism   Streptomyces sp. BHT-5-2     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4442599..4452913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vicK 4447599..4447913 (+) 315 - - Regulator

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 10841.96 Da        Isoelectric Point: 5.6195

>NTDB_id=522832 K2224_RS19675 WP_313904802.1 4447599..4447913(+) (vicK) [Streptomyces sp. BHT-5-2]
MGNLVDNAQRHAGSAVRVAVRQEAAGTVALDVTDDGPGVPPADRERVFTRFIRLDDARSRDEGGAGLGLGIVRDVVHRHG
GRIEVGEADGGGARFTVTLPNASD

Nucleotide


Download         Length: 315 bp        

>NTDB_id=522832 K2224_RS19675 WP_313904802.1 4447599..4447913(+) (vicK) [Streptomyces sp. BHT-5-2]
CTGGGCAACCTCGTCGACAACGCCCAGCGCCACGCCGGGTCGGCCGTCCGCGTCGCCGTACGCCAAGAGGCCGCCGGCAC
GGTCGCCCTGGACGTCACCGACGACGGCCCCGGGGTCCCACCGGCCGACCGGGAGCGGGTCTTCACCCGTTTCATCCGTC
TCGACGACGCCCGCTCCCGGGACGAGGGCGGGGCCGGCCTGGGCCTGGGGATCGTCCGGGACGTCGTCCACCGGCACGGC
GGCCGCATCGAGGTCGGCGAAGCCGACGGTGGCGGCGCGCGCTTCACGGTCACCCTGCCGAACGCGTCCGATTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

36.893

99.038

0.365
  micB Streptococcus pneumoniae Cp1015

36.893

99.038

0.365
  covS Lactococcus lactis subsp. lactis strain DGCC12653

36.538

100

0.365