Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5A08_RS05195 Genome accession   NZ_CP081480
Coordinates   1009471..1010019 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC12658     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1004471..1015019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A08_RS05160 (K5A08_05160) - 1004661..1005086 (+) 426 WP_002890069.1 GNAT family N-acetyltransferase -
  K5A08_RS05165 (K5A08_05165) - 1005150..1005770 (+) 621 WP_221807998.1 NAD(P)H-dependent oxidoreductase -
  K5A08_RS05170 (K5A08_05170) - 1005770..1006375 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  K5A08_RS05175 (K5A08_05175) pgsA 1006500..1007036 (+) 537 WP_221807999.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K5A08_RS05180 (K5A08_05180) rseP 1007033..1008139 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  K5A08_RS05185 (K5A08_05185) - 1008132..1008998 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  K5A08_RS05190 (K5A08_05190) rpsF 1009085..1009459 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  K5A08_RS05195 (K5A08_05195) ssb 1009471..1010019 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  K5A08_RS05200 (K5A08_05200) rpsR 1010030..1010290 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  K5A08_RS05205 (K5A08_05205) lon 1010350..1012725 (-) 2376 WP_002853487.1 endopeptidase La -
  K5A08_RS05210 (K5A08_05210) - 1012742..1013389 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  K5A08_RS05215 (K5A08_05215) fliW 1013550..1013939 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  K5A08_RS05220 (K5A08_05220) proC 1013939..1014670 (+) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  K5A08_RS05225 (K5A08_05225) ctsT 1014667..1014969 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=522677 K5A08_RS05195 WP_002890071.1 1009471..1010019(+) (ssb) [Campylobacter jejuni strain NCTC12658]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=522677 K5A08_RS05195 WP_002890071.1 1009471..1010019(+) (ssb) [Campylobacter jejuni strain NCTC12658]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363