Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JG479_RS02005 Genome accession   NZ_CP066804
Coordinates   450120..450845 (+) Length   241 a.a.
NCBI ID   WP_200219822.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. LC2018020214     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 445120..455845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG479_RS01990 (JG479_01990) - 445829..447670 (+) 1842 WP_200219821.1 hypothetical protein -
  JG479_RS01995 (JG479_01995) - 447673..449448 (+) 1776 WP_182694821.1 tyrosine-type recombinase/integrase -
  JG479_RS02000 (JG479_02000) - 449450..450040 (+) 591 WP_182694820.1 hypothetical protein -
  JG479_RS02005 (JG479_02005) ssb 450120..450845 (+) 726 WP_200219822.1 single-stranded DNA-binding protein Machinery gene
  JG479_RS02010 (JG479_02010) - 451107..453836 (+) 2730 WP_200219823.1 response regulator -
  JG479_RS02015 (JG479_02015) arsH 454021..454737 (+) 717 WP_039485802.1 arsenical resistance protein ArsH -
  JG479_RS02020 (JG479_02020) arsB 454747..455763 (+) 1017 WP_200219824.1 ACR3 family arsenite efflux transporter -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 25850.04 Da        Isoelectric Point: 4.9264

>NTDB_id=522657 JG479_RS02005 WP_200219822.1 450120..450845(+) (ssb) [Pseudoalteromonas sp. LC2018020214]
MSRGVNKVILVGNLGQDPEVRYMPNGNGVANITLATSDSYKDKNTGQMVDKTEWHRVVFFGKLAEIVGEYCRKGSQIYVE
GKLQTRKWTDQQGQEKYTTEIVVDGFTGQMQMLGARGGDQQSGGYQGNQSQGGQQGGGYQGNQAQSAQQSGGYGQNNQGQ
NNQQQGGYAPQQQAAPAAQPQSAPAPQQNNQYQQPQGGFAPQQNSAPQQQGGFAPKPQSAPQGGASNPMEPTIDFDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=522657 JG479_RS02005 WP_200219822.1 450120..450845(+) (ssb) [Pseudoalteromonas sp. LC2018020214]
ATGAGTCGTGGGGTGAACAAAGTAATTTTGGTTGGTAATTTAGGGCAAGATCCTGAAGTTCGTTATATGCCTAACGGCAA
CGGTGTAGCAAATATTACCCTAGCAACTTCGGATAGCTATAAAGATAAGAACACTGGCCAAATGGTTGATAAAACTGAGT
GGCACCGTGTTGTATTTTTTGGCAAGTTAGCTGAAATTGTTGGTGAATATTGTCGTAAAGGTTCACAAATTTATGTTGAA
GGTAAACTTCAAACACGTAAGTGGACCGATCAACAAGGCCAAGAAAAGTACACTACAGAAATAGTCGTAGATGGCTTTAC
TGGTCAAATGCAAATGTTGGGCGCACGTGGTGGCGATCAACAAAGTGGTGGTTACCAAGGTAATCAATCACAAGGTGGGC
AACAAGGTGGTGGTTACCAAGGTAATCAAGCGCAAAGTGCTCAACAAAGCGGTGGTTACGGCCAAAATAATCAAGGCCAA
AATAACCAGCAACAAGGTGGTTATGCTCCACAACAGCAAGCAGCACCTGCAGCGCAACCTCAGTCAGCGCCAGCACCACA
ACAAAATAATCAATACCAACAACCGCAAGGCGGCTTTGCACCACAACAAAATAGTGCACCGCAGCAGCAAGGTGGTTTCG
CTCCTAAACCACAAAGTGCTCCGCAAGGTGGTGCATCAAACCCAATGGAACCAACCATTGATTTTGATGACGATATCCCG
TTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.133

100

0.481
  ssb Glaesserella parasuis strain SC1401

50.267

77.593

0.39