Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JG534_RS03435 Genome accession   NZ_CP066745
Coordinates   646138..646911 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 641138..651911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG534_RS03420 (JG534_03420) - 641987..643921 (-) 1935 WP_002868433.1 ribonuclease R family protein -
  JG534_RS03425 (JG534_03425) ilvC 644040..645062 (+) 1023 WP_002868432.1 ketol-acid reductoisomerase -
  JG534_RS03430 (JG534_03430) - 645066..646148 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  JG534_RS03435 (JG534_03435) dprA 646138..646911 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  JG534_RS03440 (JG534_03440) ruvX 646908..647291 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  JG534_RS03445 (JG534_03445) - 647320..648159 (+) 840 WP_072223322.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JG534_RS03450 (JG534_03450) msrA 648335..648832 (-) 498 WP_002868429.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JG534_RS03455 (JG534_03455) ppa 648873..649391 (-) 519 WP_002867724.1 inorganic diphosphatase -
  JG534_RS03460 (JG534_03460) adk 649401..649979 (-) 579 WP_002868428.1 adenylate kinase -
  JG534_RS03465 (JG534_03465) aspS 649976..651727 (-) 1752 WP_002868427.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=522278 JG534_RS03435 WP_002868431.1 646138..646911(+) (dprA) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=522278 JG534_RS03435 WP_002868431.1 646138..646911(+) (dprA) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459