Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | JGY90_RS06945 | Genome accession | NZ_CP066726 |
| Coordinates | 1419059..1420033 (+) | Length | 324 a.a. |
| NCBI ID | WP_225518584.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain TMW 2.1324 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1414059..1425033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY90_RS06910 (JGY90_06875) | rpmG | 1414167..1414316 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| JGY90_RS06915 (JGY90_06880) | - | 1414447..1414989 (+) | 543 | WP_069794316.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| JGY90_RS06920 (JGY90_06885) | - | 1415001..1416458 (+) | 1458 | WP_069794317.1 | rhomboid family intramembrane serine protease | - |
| JGY90_RS06925 (JGY90_06890) | - | 1416442..1416636 (+) | 195 | WP_042363548.1 | YqgQ family protein | - |
| JGY90_RS06930 (JGY90_06895) | - | 1417026..1418012 (+) | 987 | WP_217873901.1 | glucokinase | - |
| JGY90_RS06935 (JGY90_06900) | - | 1418012..1418335 (+) | 324 | WP_042362616.1 | MTH1187 family thiamine-binding protein | - |
| JGY90_RS06940 (JGY90_06905) | - | 1418337..1418960 (+) | 624 | WP_225518583.1 | MBL fold metallo-hydrolase | - |
| JGY90_RS06945 (JGY90_06910) | comGA | 1419059..1420033 (+) | 975 | WP_225518584.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JGY90_RS06950 (JGY90_06915) | comGB | 1420005..1421072 (+) | 1068 | WP_225518585.1 | competence type IV pilus assembly protein ComGB | - |
| JGY90_RS06955 (JGY90_06920) | comGC | 1421092..1421409 (+) | 318 | WP_029377192.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JGY90_RS06960 (JGY90_06925) | comGD | 1421384..1421833 (+) | 450 | WP_225518586.1 | competence type IV pilus minor pilin ComGD | - |
| JGY90_RS06965 (JGY90_06930) | - | 1421820..1422119 (+) | 300 | WP_069794320.1 | hypothetical protein | - |
| JGY90_RS06970 (JGY90_06935) | comGF | 1422091..1422534 (+) | 444 | WP_069794321.1 | competence type IV pilus minor pilin ComGF | - |
| JGY90_RS14245 (JGY90_06940) | - | 1422575..1422706 (+) | 132 | WP_263855849.1 | hypothetical protein | - |
| JGY90_RS06975 (JGY90_06945) | - | 1422693..1423214 (+) | 522 | WP_047172318.1 | shikimate kinase | - |
| JGY90_RS06980 (JGY90_06950) | gcvT | 1423402..1424493 (+) | 1092 | WP_225518587.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37190.41 Da Isoelectric Point: 9.3719
>NTDB_id=522177 JGY90_RS06945 WP_225518584.1 1419059..1420033(+) (comGA) [Staphylococcus xylosus strain TMW 2.1324]
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGVTVQQLIQSIISILNQRLITNIKGERELVYEQINKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGVTVQQLIQSIISILNQRLITNIKGERELVYEQINKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=522177 JGY90_RS06945 WP_225518584.1 1419059..1420033(+) (comGA) [Staphylococcus xylosus strain TMW 2.1324]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAGGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATC
TTAAGACTGCTAGAAATGGGGGTAACGGTTCAACAACTCATACAATCAATCATTAGCATATTAAATCAAAGACTAATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAAATAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAGGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATC
TTAAGACTGCTAGAAATGGGGGTAACGGTTCAACAACTCATACAATCAATCATTAGCATATTAAATCAAAGACTAATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAAATAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.654 |
100 |
0.627 |
| comGA | Staphylococcus aureus N315 |
62.654 |
100 |
0.627 |