Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGY90_RS04300 Genome accession   NZ_CP066726
Coordinates   921552..921971 (+) Length   139 a.a.
NCBI ID   WP_042362323.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain TMW 2.1324     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 916552..926971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY90_RS04270 (JGY90_04245) atpD 916591..918003 (+) 1413 WP_042362320.1 F0F1 ATP synthase subunit beta -
  JGY90_RS04275 (JGY90_04250) - 918023..918427 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  JGY90_RS04280 (JGY90_04255) - 918770..919003 (+) 234 WP_042362321.1 DUF1146 family protein -
  JGY90_RS04285 (JGY90_04260) murA 919110..920375 (+) 1266 WP_042362322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JGY90_RS04290 (JGY90_04265) fabZ 920433..920870 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JGY90_RS04295 (JGY90_04270) - 920921..921361 (-) 441 WP_225518424.1 YwpF-like family protein -
  JGY90_RS04300 (JGY90_04275) ssb 921552..921971 (+) 420 WP_042362323.1 single-stranded DNA-binding protein Machinery gene
  JGY90_RS04305 (JGY90_04280) - 922398..923093 (+) 696 WP_042362324.1 transglycosylase family protein -
  JGY90_RS04310 (JGY90_04285) tenA 923533..924213 (+) 681 WP_042362325.1 thiaminase II -
  JGY90_RS04315 (JGY90_04290) thiD 924215..925036 (+) 822 WP_047172091.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JGY90_RS04320 (JGY90_04295) thiM 925029..925817 (+) 789 WP_047172092.1 hydroxyethylthiazole kinase -
  JGY90_RS04325 (JGY90_04300) thiE 925820..926458 (+) 639 WP_047172093.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16190.60 Da        Isoelectric Point: 6.4617

>NTDB_id=522164 JGY90_RS04300 WP_042362323.1 921552..921971(+) (ssb) [Staphylococcus xylosus strain TMW 2.1324]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=522164 JGY90_RS04300 WP_042362323.1 921552..921971(+) (ssb) [Staphylococcus xylosus strain TMW 2.1324]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

65.421

76.978

0.504
  ssb Staphylococcus aureus MW2

64.486

76.978

0.496