Detailed information NTG0522160

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: JGY90_RS00185
• Genome accession: NZ_CP066726
• Coordinates: 45517..46866 (-)
• Length: 449 a.a.
• NCBI ID: WP_225518266.1
• Uniprot ID: -
• Organism: Staphylococcus xylosus strain TMW 2.1324
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	43869..45497	45517..46866	flank	20

Gene organization within MGE regions

Location: 43869..46866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGY90_RS00180 (JGY90_00180)	ccrB	43869..45497 (-)	1629	WP_225518265.1	cassette chromosome recombinase CcrB	Machinery gene
JGY90_RS00185 (JGY90_00185)	ccrA	45517..46866 (-)	1350	WP_225518266.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51950.79 Da
• Isoelectric Point: 10.1134

>NTDB_id=522160 JGY90_RS00185 WP_225518266.1 45517..46866(-) (ccrA) [Staphylococcus xylosus strain TMW 2.1324]
MKQAIGYLRQSTLKQQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLIKLCQQYNVDILSVTDGYFDLNKSFDRLKLNIFISLAELESNNIGEQVSNGIKEKARQGKLITTHAPFGYHYY
KGTFVINPVEAQTVTAVFKYYLQGYGYKKIAQYLEEDNKLINRKTYQVRNIIMNPNYCGRVNNKYGTFDNMFPSIISKAM
YKNAQAIRVNKQVQRTPSANLLKQKIKCPCCDSTLTNMTIRKKEHTLRYYVCPKNMNESRFVCSFKGINAQELEVQVLVT
CQNFFQNQQLYSKINNTIHQRLKKQRVIEAKSTLTQEQLIDKLAKGMIDAESFRKQTHSMNQKHKTISSISDNQLQASLQ
NVIQQSFTLNMLYPHIDEIHITKNKALVGIYFKNEPLNIVNQTSQSSIA

Nucleotide

• Length: 1350 bp

>NTDB_id=522160 JGY90_RS00185 WP_225518266.1 45517..46866(-) (ccrA) [Staphylococcus xylosus strain TMW 2.1324]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAACAACAATCACTCTCAGCCCAGAAACAAACCATCAAGGC
ATTAGCCGAAAAGCATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGTTATCGTCTGAATCGACTTCATCGTAAT
TTGAAAAATGCGCTAAAATTAATTAAATTATGCCAGCAGTACAATGTAGATATCTTGAGTGTTACCGATGGCTATTTTGA
CTTAAACAAATCATTTGATCGTCTAAAACTCAATATCTTCATTTCATTAGCTGAACTTGAGTCAAATAATATTGGTGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCACGTCAAGGTAAACTGATTACCACACATGCACCTTTTGGATATCATTATTAT
AAAGGCACATTTGTAATCAACCCAGTAGAAGCACAAACGGTGACTGCAGTATTCAAATACTATCTTCAAGGGTATGGTTA
CAAAAAGATTGCACAATATTTGGAAGAAGATAATAAGTTAATCAACCGAAAAACATATCAAGTACGTAACATTATTATGA
ACCCTAATTACTGTGGACGTGTGAATAACAAATACGGTACTTTTGATAATATGTTCCCATCTATTATCAGTAAAGCAATG
TATAAAAATGCTCAAGCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACACTGACAAATATGACAATAAGAAAAAAAGAACATACATTGCGATATTATGTTTGTCCTA
AAAATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGGATAAATGCACAAGAATTAGAAGTTCAAGTCTTAGTTACA
TGTCAGAACTTCTTTCAAAACCAACAGCTCTATTCAAAAATTAATAATACGATTCATCAACGCCTCAAAAAACAAAGAGT
GATAGAAGCTAAAAGTACGCTAACTCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAATCATTCA
GAAAACAGACTCATTCGATGAATCAAAAGCACAAAACCATATCCTCCATAAGTGATAATCAGTTGCAAGCATCACTACAA
AATGTGATACAGCAAAGTTTCACGTTAAACATGCTGTATCCCCATATTGATGAAATTCATATTACTAAAAACAAAGCCCT
TGTTGGGATATATTTCAAAAATGAACCATTGAACATTGTGAACCAAACCTCGCAATCATCGATTGCCTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (261-321)

• Recombinase (Recombinase) (168-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	77.728	100	0.777
ccrA	Staphylococcus aureus N315	71.492	100	0.715