Detailed information NTG0522159

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: JGY90_RS00180
• Genome accession: NZ_CP066726
• Coordinates: 43869..45497 (-)
• Length: 542 a.a.
• NCBI ID: WP_225518265.1
• Uniprot ID: -
• Organism: Staphylococcus xylosus strain TMW 2.1324
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	43869..45497	43869..45497	within	0

Gene organization within MGE regions

Location: 43869..45497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGY90_RS00180 (JGY90_00180)	ccrB	43869..45497 (-)	1629	WP_225518265.1	cassette chromosome recombinase CcrB	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62360.22 Da
• Isoelectric Point: 9.8014

>NTDB_id=522159 JGY90_RS00180 WP_225518265.1 43869..45497(-) (ccrB) [Staphylococcus xylosus strain TMW 2.1324]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQSRKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMGQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EVSGKLHNLVKTIEDNPDLTSALKATIHKYETQLNDIKNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVALKLNNEIIKQLFNNTNLDEVLLSTSSLFLPQTLYFQI

Nucleotide

• Length: 1629 bp

>NTDB_id=522159 JGY90_RS00180 WP_225518265.1 43869..45497(-) (ccrB) [Staphylococcus xylosus strain TMW 2.1324]
ATGCAACAACTTAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGCTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAAAATGTATTCATGGGTCAAACCCGACGCGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAACCAACATGAAGCGAATATTGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATTGCGAATGCACTCAATCACAAAGGATACGTGACTAAAA
AAGGAAAGCCTTTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATGTTGGTAAAATTCAATTCGCAAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGGCTGAATGATAAACCAATAATAGCTGAAGGTAAGCATTCCCCTATTAT
TATTCAAGACTTATGGGATAAAGTCCAATCACGTAAAAAACAAGTCAGTCAAAAACCTCAAGTCCACGGTAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGGTCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAAAATAAAGTCGATATTGGTGCATTGAACCACGATATCGCTTATAAACAACAACAATACGAT
GAAGTCAGCGGGAAACTCCATAATTTAGTTAAAACCATTGAAGATAATCCGGACCTAACATCTGCATTGAAAGCAACTAT
TCATAAATATGAAACACAACTCAATGACATTAAAAATCAAATGAATCAACTCAAACAGCAACAAAATCAAGAGAAACTAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTAATTGACCGTATTGATATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCGCTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATACCAATCTAGACGAAGTGCTCCTCAGTACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

• Resolvase, N terminal domain (Resolvase) (11-156)

• Recombinase (Recombinase) (180-280)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	86.531	100	0.865