Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   JGY90_RS00180 Genome accession   NZ_CP066726
Coordinates   43869..45497 (-) Length   542 a.a.
NCBI ID   WP_225518265.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain TMW 2.1324     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38869..50497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY90_RS00155 (JGY90_00155) - 40916..41275 (+) 360 Protein_28 type I restriction enzyme endonuclease domain-containing protein -
  JGY90_RS00160 (JGY90_00160) - 41321..42001 (-) 681 WP_225518261.1 replication initiation protein -
  JGY90_RS00165 (JGY90_00165) - 42129..42632 (-) 504 WP_225518262.1 DUF1643 domain-containing protein -
  JGY90_RS00170 (JGY90_00170) - 42648..42962 (-) 315 WP_225518263.1 DUF960 family protein -
  JGY90_RS00175 (JGY90_00175) - 43056..43397 (-) 342 WP_225518264.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JGY90_RS00180 (JGY90_00180) ccrB 43869..45497 (-) 1629 WP_225518265.1 cassette chromosome recombinase CcrB Machinery gene
  JGY90_RS00185 (JGY90_00185) ccrA 45517..46866 (-) 1350 WP_225518266.1 cassette chromosome recombinase CcrA Machinery gene
  JGY90_RS00190 (JGY90_00190) - 47037..47300 (-) 264 WP_047505043.1 hypothetical protein -
  JGY90_RS00195 (JGY90_00195) cch1 47366..49156 (-) 1791 WP_225518267.1 cassette chromosome replicative helicase -
  JGY90_RS00200 (JGY90_00200) ssb 49156..49449 (-) 294 WP_040030083.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62360.22 Da        Isoelectric Point: 9.8014

>NTDB_id=522159 JGY90_RS00180 WP_225518265.1 43869..45497(-) (ccrB) [Staphylococcus xylosus strain TMW 2.1324]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQSRKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMGQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EVSGKLHNLVKTIEDNPDLTSALKATIHKYETQLNDIKNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVALKLNNEIIKQLFNNTNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=522159 JGY90_RS00180 WP_225518265.1 43869..45497(-) (ccrB) [Staphylococcus xylosus strain TMW 2.1324]
ATGCAACAACTTAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGCTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAAAATGTATTCATGGGTCAAACCCGACGCGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAACCAACATGAAGCGAATATTGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATTGCGAATGCACTCAATCACAAAGGATACGTGACTAAAA
AAGGAAAGCCTTTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATGTTGGTAAAATTCAATTCGCAAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGGCTGAATGATAAACCAATAATAGCTGAAGGTAAGCATTCCCCTATTAT
TATTCAAGACTTATGGGATAAAGTCCAATCACGTAAAAAACAAGTCAGTCAAAAACCTCAAGTCCACGGTAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGGTCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAAAATAAAGTCGATATTGGTGCATTGAACCACGATATCGCTTATAAACAACAACAATACGAT
GAAGTCAGCGGGAAACTCCATAATTTAGTTAAAACCATTGAAGATAATCCGGACCTAACATCTGCATTGAAAGCAACTAT
TCATAAATATGAAACACAACTCAATGACATTAAAAATCAAATGAATCAACTCAAACAGCAACAAAATCAAGAGAAACTAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTAATTGACCGTATTGATATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCGCTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATACCAATCTAGACGAAGTGCTCCTCAGTACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterProScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.531

100

0.865