Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGY88_RS04420 Genome accession   NZ_CP066721
Coordinates   947704..948123 (+) Length   139 a.a.
NCBI ID   WP_101105558.1    Uniprot ID   A0AAQ0LWW9
Organism   Staphylococcus xylosus strain 2.1523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 942704..953123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS04390 (JGY88_04360) atpD 942724..944136 (+) 1413 WP_101105554.1 F0F1 ATP synthase subunit beta -
  JGY88_RS04395 (JGY88_04365) - 944156..944560 (+) 405 WP_101105555.1 F0F1 ATP synthase subunit epsilon -
  JGY88_RS04400 (JGY88_04370) - 944901..945134 (+) 234 WP_042362321.1 DUF1146 family protein -
  JGY88_RS04405 (JGY88_04375) murA 945242..946507 (+) 1266 WP_101105556.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JGY88_RS04410 (JGY88_04380) fabZ 946565..947002 (+) 438 WP_101105557.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JGY88_RS04415 (JGY88_04385) - 947073..947513 (-) 441 WP_017722099.1 YwpF-like family protein -
  JGY88_RS04420 (JGY88_04390) ssb 947704..948123 (+) 420 WP_101105558.1 single-stranded DNA-binding protein Machinery gene
  JGY88_RS04425 (JGY88_04395) - 948551..949246 (+) 696 WP_101105559.1 transglycosylase family protein -
  JGY88_RS04430 (JGY88_04400) tenA 949686..950366 (+) 681 WP_101105560.1 thiaminase II -
  JGY88_RS04435 (JGY88_04405) thiD 950368..951189 (+) 822 WP_101105561.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JGY88_RS04440 (JGY88_04410) thiM 951182..951970 (+) 789 WP_101105562.1 hydroxyethylthiazole kinase -
  JGY88_RS04445 (JGY88_04415) thiE 951973..952611 (+) 639 WP_101105563.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16163.58 Da        Isoelectric Point: 6.4617

>NTDB_id=522130 JGY88_RS04420 WP_101105558.1 947704..948123(+) (ssb) [Staphylococcus xylosus strain 2.1523]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVSEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=522130 JGY88_RS04420 WP_101105558.1 947704..948123(+) (ssb) [Staphylococcus xylosus strain 2.1523]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGCCAAATGCAATCACGAAAA
TACGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACTATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAGTGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

65.421

76.978

0.504
  ssb Staphylococcus aureus MW2

64.486

76.978

0.496