Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   JGY88_RS00165 Genome accession   NZ_CP066721
Coordinates   43039..44664 (-) Length   541 a.a.
NCBI ID   WP_225486674.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38039..49664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS00150 (JGY88_00150) - 41298..41801 (-) 504 WP_225486671.1 DUF1643 domain-containing protein -
  JGY88_RS00155 (JGY88_00155) - 41818..42129 (-) 312 WP_225486672.1 DUF960 family protein -
  JGY88_RS00160 (JGY88_00160) - 42223..42564 (-) 342 WP_225486673.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JGY88_RS00165 (JGY88_00165) ccrB 43039..44664 (-) 1626 WP_225486674.1 cassette chromosome recombinase CcrB Machinery gene
  JGY88_RS00170 (JGY88_00170) ccrA 44686..46035 (-) 1350 WP_225486675.1 cassette chromosome recombinase CcrA Machinery gene
  JGY88_RS00175 (JGY88_00175) - 46206..46469 (-) 264 WP_047505043.1 hypothetical protein -
  JGY88_RS00180 (JGY88_00180) cch1 46535..48325 (-) 1791 WP_069821206.1 cassette chromosome replicative helicase -
  JGY88_RS00185 (JGY88_00185) ssb 48325..48618 (-) 294 WP_002511823.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62184.12 Da        Isoelectric Point: 9.7148

>NTDB_id=522125 JGY88_RS00165 WP_225486674.1 43039..44664(-) (ccrB) [Staphylococcus xylosus strain 2.1523]
MNEMKKKRIGAYIRVSTERQVEGYSVDGQITQIEQFCQFNGYDLVDIYADRGISGKSMNRPALQRMLQDAKNGKLDCVIV
YKINRLARNTSNLLTIVEELHRQNVEFFSLSERMEVKNSTGKLLLNILASFSEFERNTILENIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYSKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDAPVIAEGKHIPIIGKELWNKVQARKKQVSQKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAELNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQINQLKQQQNQEKPSYDTKQIAVLLQQIFQNVESMDKAQLKA
LYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=522125 JGY88_RS00165 WP_225486674.1 43039..44664(-) (ccrB) [Staphylococcus xylosus strain 2.1523]
ATGAATGAAATGAAGAAGAAAAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTGGAAGGTTATAGTGTAGA
TGGGCAAATTACACAAATAGAGCAATTTTGCCAATTTAATGGTTATGACCTCGTTGATATATACGCAGATCGAGGTATTT
CTGGAAAATCTATGAACCGCCCTGCACTACAGCGCATGTTACAAGACGCAAAAAATGGAAAGTTAGACTGTGTGATTGTT
TATAAAATAAATCGTTTAGCACGTAATACTTCCAACCTACTAACAATAGTCGAAGAACTACATCGCCAAAATGTTGAATT
TTTTAGCCTGTCTGAACGCATGGAAGTCAAAAATTCGACCGGCAAACTATTATTAAATATACTTGCAAGTTTCTCCGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACACCGGTCAACATCAAAGAGCTTTAGAGGGCTATTATCAAGGAAATCTT
CCATTAGGATATAATAACATACCTGATAATAAGAAAGAATTAATGATTAACCAACATGAAGCTAATATTGTTAAATACAT
TTTTGAATCTTATTCCAAAGGTCATGGTTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATCCTCTCTAATCCATTTTATATAGGTAAAATTCAATTCGCAAAATAT
AAGGATTGGAACGATAAGCGTCGTAAAGGATTGAATGATGCACCTGTCATTGCCGAAGGTAAACACATCCCTATTATTGG
CAAAGAATTATGGAATAAAGTCCAAGCACGTAAAAAACAAGTCAGTCAAAAACCACAAGTTCATGGTAAAGGAACAAATC
TTTTGACAGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAATACACTCAAAGACGGT
ACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGTTAG
AGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGAACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGACATTACAAACCAAATTAATCAACTCAAGCAGCAACAAAATCAAGAAAAACCCTCTT
ACGATACGAAGCAAATCGCTGTCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAAGCA
TTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAAACT
CAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(294-359)

Recombinase (Recombinase)

(179-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

77.491

100

0.776