Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JGY87_RS06785 Genome accession   NZ_CP066719
Coordinates   1411829..1412803 (+) Length   324 a.a.
NCBI ID   WP_225489154.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain TMW 2.1602     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406829..1417803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY87_RS06750 (JGY87_06700) rpmG 1406941..1407090 (+) 150 WP_002483181.1 50S ribosomal protein L33 -
  JGY87_RS06755 (JGY87_06705) - 1407221..1407763 (+) 543 WP_029377184.1 5-formyltetrahydrofolate cyclo-ligase -
  JGY87_RS06760 (JGY87_06710) - 1407775..1409232 (+) 1458 WP_225489152.1 rhomboid family intramembrane serine protease -
  JGY87_RS06765 (JGY87_06715) - 1409216..1409413 (+) 198 WP_029377186.1 YqgQ family protein -
  JGY87_RS06770 (JGY87_06720) - 1409795..1410781 (+) 987 WP_029377187.1 glucokinase -
  JGY87_RS06775 (JGY87_06725) - 1410781..1411104 (+) 324 WP_029377188.1 MTH1187 family thiamine-binding protein -
  JGY87_RS06780 (JGY87_06730) - 1411106..1411729 (+) 624 WP_029377189.1 MBL fold metallo-hydrolase -
  JGY87_RS06785 (JGY87_06735) comGA 1411829..1412803 (+) 975 WP_225489154.1 competence type IV pilus ATPase ComGA Machinery gene
  JGY87_RS06790 (JGY87_06740) comGB 1412775..1413842 (+) 1068 WP_051664335.1 competence type IV pilus assembly protein ComGB -
  JGY87_RS06795 (JGY87_06745) comGC 1413862..1414179 (+) 318 WP_029377192.1 competence type IV pilus major pilin ComGC Machinery gene
  JGY87_RS06800 (JGY87_06750) comGD 1414157..1414603 (+) 447 WP_038679684.1 competence type IV pilus minor pilin ComGD -
  JGY87_RS06805 (JGY87_06755) - 1414590..1414889 (+) 300 WP_029377194.1 hypothetical protein -
  JGY87_RS06810 (JGY87_06760) comGF 1414873..1415304 (+) 432 WP_225489156.1 competence type IV pilus minor pilin ComGF -
  JGY87_RS06815 (JGY87_06765) - 1415484..1415984 (+) 501 WP_037557022.1 shikimate kinase -
  JGY87_RS06820 (JGY87_06770) gcvT 1416172..1417263 (+) 1092 WP_225489157.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37182.34 Da        Isoelectric Point: 9.2373

>NTDB_id=522109 JGY87_RS06785 WP_225489154.1 1411829..1412803(+) (comGA) [Staphylococcus xylosus strain TMW 2.1602]
MKLLFNSMIEKAISNDESDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEDPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNVKGERELVYEQITKEDVYHFFKNSYTLPKEFHNLSYKLNKMSKEGMICETSM
ERYL

Nucleotide


Download         Length: 975 bp        

>NTDB_id=522109 JGY87_RS06785 WP_225489154.1 1411829..1412803(+) (comGA) [Staphylococcus xylosus strain TMW 2.1602]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAGTAATGATGAATCAGATATTCATTTTATCCCCGCTGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACATAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCACTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TAAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGACCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCTTTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCAGATATTATCTTGATCGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTCATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATT
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCACTAGCATATTAAATCAAAGGCTTATTAC
TAACGTAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATGTTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGAATTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

62.654

100

0.627
  comGA Staphylococcus aureus N315

62.654

100

0.627