Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K5A55_RS05915 Genome accession   NZ_CP081306
Coordinates   1205222..1205959 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ec1079     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200222..1210959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A55_RS05885 (K5A55_05885) yfiL 1200380..1200745 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  K5A55_RS05890 (K5A55_05890) aroF 1200955..1202025 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K5A55_RS05895 (K5A55_05895) tyrA 1202036..1203157 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K5A55_RS05900 (K5A55_05900) pheA 1203200..1204360 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  K5A55_RS05905 (K5A55_05905) pheL 1204459..1204506 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  K5A55_RS05910 (K5A55_05910) raiA 1204610..1204951 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K5A55_RS05915 (K5A55_05915) comL 1205222..1205959 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K5A55_RS05920 (K5A55_05920) rluD 1206094..1207074 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5A55_RS05925 (K5A55_05925) yfiH 1207071..1207802 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  K5A55_RS05930 (K5A55_05930) clpC 1207932..1210505 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=522066 K5A55_RS05915 WP_000197686.1 1205222..1205959(-) (comL) [Escherichia coli strain Ec1079]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=522066 K5A55_RS05915 WP_000197686.1 1205222..1205959(-) (comL) [Escherichia coli strain Ec1079]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376