Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JGZ25_RS08200 Genome accession   NZ_CP066717
Coordinates   1712561..1713448 (-) Length   295 a.a.
NCBI ID   WP_037543183.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DG072     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1707561..1718448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ25_RS08185 (JGZ25_08185) xerC 1708065..1708955 (-) 891 WP_037543179.1 tyrosine recombinase XerC -
  JGZ25_RS08190 (JGZ25_08190) trmFO 1709076..1710380 (-) 1305 WP_037543180.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JGZ25_RS08195 (JGZ25_08195) topA 1710408..1712477 (-) 2070 WP_037543181.1 type I DNA topoisomerase -
  JGZ25_RS08200 (JGZ25_08200) dprA 1712561..1713448 (-) 888 WP_037543183.1 DNA-processing protein DprA Machinery gene
  JGZ25_RS08205 (JGZ25_08205) sucD 1713687..1714592 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  JGZ25_RS08210 (JGZ25_08210) sucC 1714614..1715780 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  JGZ25_RS08215 (JGZ25_08215) - 1716047..1716322 (-) 276 WP_015729039.1 hypothetical protein -
  JGZ25_RS08220 (JGZ25_08220) - 1716414..1717199 (-) 786 WP_037543184.1 ribonuclease HII -
  JGZ25_RS08225 (JGZ25_08225) ylqF 1717192..1718064 (-) 873 WP_037543186.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33510.99 Da        Isoelectric Point: 8.4807

>NTDB_id=522044 JGZ25_RS08200 WP_037543183.1 1712561..1713448(-) (dprA) [Staphylococcus pseudintermedius strain DG072]
MKQLLLLLLYAGFSTQQIQSCYPKLCTLSGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=522044 JGZ25_RS08200 WP_037543183.1 1712561..1713448(-) (dprA) [Staphylococcus pseudintermedius strain DG072]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTAC
TTTATCAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495