Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JGZ40_RS08405 Genome accession   NZ_CP066712
Coordinates   1722023..1722910 (-) Length   295 a.a.
NCBI ID   WP_100006559.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP027     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1717023..1727910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ40_RS08390 (JGZ40_08335) xerC 1717527..1718438 (-) 912 WP_390490389.1 tyrosine recombinase XerC -
  JGZ40_RS08395 (JGZ40_08340) trmFO 1718538..1719842 (-) 1305 WP_233276447.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JGZ40_RS08400 (JGZ40_08345) topA 1719870..1721939 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  JGZ40_RS08405 (JGZ40_08350) dprA 1722023..1722910 (-) 888 WP_100006559.1 DNA-processing protein DprA Machinery gene
  JGZ40_RS08410 (JGZ40_08355) sucD 1723145..1724050 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  JGZ40_RS08415 (JGZ40_08360) sucC 1724072..1725238 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  JGZ40_RS08420 (JGZ40_08365) - 1725505..1725780 (-) 276 WP_015729039.1 hypothetical protein -
  JGZ40_RS08425 (JGZ40_08370) - 1725872..1726657 (-) 786 WP_100007381.1 ribonuclease HII -
  JGZ40_RS08430 (JGZ40_08375) ylqF 1726650..1727522 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33601.05 Da        Isoelectric Point: 8.6269

>NTDB_id=521906 JGZ40_RS08405 WP_100006559.1 1722023..1722910(-) (dprA) [Staphylococcus pseudintermedius strain DSP027]
MKQLLLLLLYAGFSTQQIQSYYPKLCTLTGNLPQRIQSFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=521906 JGZ40_RS08405 WP_100006559.1 1722023..1722910(-) (dprA) [Staphylococcus pseudintermedius strain DSP027]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAATCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGCTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTTAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495