Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JGZ56_RS07670 Genome accession   NZ_CP066711
Coordinates   1617462..1618349 (-) Length   295 a.a.
NCBI ID   WP_063278812.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP030     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1612462..1623349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ56_RS07655 (JGZ56_07655) xerC 1612966..1613856 (-) 891 WP_037543179.1 tyrosine recombinase XerC -
  JGZ56_RS07660 (JGZ56_07660) trmFO 1613977..1615281 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JGZ56_RS07665 (JGZ56_07665) topA 1615309..1617378 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  JGZ56_RS07670 (JGZ56_07670) dprA 1617462..1618349 (-) 888 WP_063278812.1 DNA-processing protein DprA Machinery gene
  JGZ56_RS07675 (JGZ56_07675) sucD 1618588..1619493 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  JGZ56_RS07680 (JGZ56_07680) sucC 1619515..1620681 (-) 1167 WP_063278813.1 ADP-forming succinate--CoA ligase subunit beta -
  JGZ56_RS07685 (JGZ56_07685) - 1620948..1621223 (-) 276 WP_015729039.1 hypothetical protein -
  JGZ56_RS07690 (JGZ56_07690) - 1621315..1622100 (-) 786 WP_037543184.1 ribonuclease HII -
  JGZ56_RS07695 (JGZ56_07695) ylqF 1622093..1622965 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33494.99 Da        Isoelectric Point: 8.4807

>NTDB_id=521876 JGZ56_RS07670 WP_063278812.1 1617462..1618349(-) (dprA) [Staphylococcus pseudintermedius strain DSP030]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=521876 JGZ56_RS07670 WP_063278812.1 1617462..1618349(-) (dprA) [Staphylococcus pseudintermedius strain DSP030]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495