Detailed information NTG0521855

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: JGZ56_RS00195
• Genome accession: NZ_CP066711
• Coordinates: 43433..45058 (-)
• Length: 541 a.a.
• NCBI ID: WP_199274292.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain DSP030
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	43906..46432	43433..45058	flank	-1152

Gene organization within MGE regions

Location: 43433..46432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGZ56_RS00195 (JGZ56_00195)	ccrB	43433..45058 (-)	1626	WP_199274292.1	recombinase family protein	Machinery gene
JGZ56_RS00200 (JGZ56_00200)	ccrA	45080..46432 (-)	1353	WP_140239484.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 541 a.a.
• Molecular weight: 62534.41 Da
• Isoelectric Point: 9.5468

>NTDB_id=521855 JGZ56_RS00195 WP_199274292.1 43433..45058(-) (ccrB) [Staphylococcus pseudintermedius strain DSP030]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNDYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYNRQHQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAITYILSNPFYIGKIQFAKY
KDWNEKRRKGLNDNPVIAEGKHAPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTSLIFCEKCGATYAASTTTNTLKDG
TKKRIRYYSCSNFRNKESKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNNITNQMNQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLKA
LYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1626 bp

>NTDB_id=521855 JGZ56_RS00195 WP_199274292.1 43433..45058(-) (ccrB) [Staphylococcus pseudintermedius strain DSP030]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTGTCCACAGAGAGACAAGTAGAGGGTTATAGCATTGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAACGACTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATCTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGATACTTGCAAGTTTTTCTGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACAACAGGCAACATCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTAACTAAAAAAG
GCAACCCTTTTAGTATTTCAGCTATTACTTATATTCTCTCAAATCCATTTTATATCGGCAAAATTCAATTCGCAAAATAC
AAAGATTGGAATGAAAAGCGTCGTAAGGGATTGAATGATAATCCAGTAATTGCTGAAGGTAAACACGCTCCTATTATTAG
TCAAGAGCTATGGGATAAAGTACAATCACGTAAAAAACAAGTAAGCCAAAAACCCCAAGTACATGGTAAAGGAACAAACC
TTTTGACGAGCCTAATTTTTTGTGAGAAATGCGGCGCCACATATGCTGCTTCCACTACTACTAATACACTTAAAGATGGC
ACCAAAAAACGCATTCGCTATTATTCATGTAGTAATTTTCGCAATAAAGAGTCAAAAGTGTGTTCCGCGAACAGCGTACG
AGCTGATGTAATAGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATTTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATAATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCATCTT
ACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAAGCA
TTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAAACT
CAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (179-279)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-355)

• Resolvase, N terminal domain (Resolvase) (11-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	78.967	100	0.791