Detailed information NTG0521856

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: JGZ56_RS00200
• Genome accession: NZ_CP066711
• Coordinates: 45080..46432 (-)
• Length: 450 a.a.
• NCBI ID: WP_140239484.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain DSP030
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	43906..46432	45080..46432	within	0

Gene organization within MGE regions

Location: 43906..46432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGZ56_RS00200 (JGZ56_00200)	ccrA	45080..46432 (-)	1353	WP_140239484.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 52652.48 Da
• Isoelectric Point: 9.9740

>NTDB_id=521856 JGZ56_RS00200 WP_140239484.1 45080..46432(-) (ccrA) [Staphylococcus pseudintermedius strain DSP030]
MKQALGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPNHYSLRYYVCPQNMNNARFVCEFKGINAQELETSVLA
TCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDEETFREQTQSLHQQSKPISSISAYKIRKAF
QNIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMKLSIV

Nucleotide

• Length: 1353 bp

>NTDB_id=521856 JGZ56_RS00200 WP_140239484.1 45080..46432(-) (ccrA) [Staphylococcus pseudintermedius strain DSP030]
ATGAAACAAGCACTAGGTTACTTACGCCAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCAGCACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAGCTCATGAAATTATGTCAAACGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACAATAGACACAGTAAAAGCACCAACAATAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCCGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGCCATTCGACACTCACAAACATGACCGTCCGAAAACCAAATCATTATTCATTGCGTTACTATGTCTGTC
CGCAAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCG
ACTTGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAG
AGATATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGAAGAAACGT
TCAGAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATAAAATTCGAAAAGCTTTC
CAAAACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAG
CCTCGCTGGCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATTATCAATTGTATAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-323)

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase (Recombinase) (170-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	95.333	100	0.953
ccrA	Staphylococcus aureus N315	74	100	0.74