Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K3830_RS10715 Genome accession   NZ_CP081009
Coordinates   2246356..2247093 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Stbl4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2241356..2252093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3830_RS10700 (K3830_10700) clpC 2241810..2244383 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K3830_RS10705 (K3830_10705) yfiH 2244513..2245244 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  K3830_RS10710 (K3830_10710) rluD 2245241..2246221 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K3830_RS10715 (K3830_10715) comL 2246356..2247093 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K3830_RS10720 (K3830_10720) raiA 2247364..2247705 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K3830_RS10725 (K3830_10725) pheL 2247809..2247856 (+) 48 WP_010723158.1 phe operon leader peptide -
  K3830_RS10730 (K3830_10730) pheA 2247955..2249115 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  K3830_RS10735 (K3830_10735) tyrA 2249158..2250279 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K3830_RS10740 (K3830_10740) aroF 2250290..2251360 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K3830_RS10745 (K3830_10745) yfiL 2251570..2251935 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=521625 K3830_RS10715 WP_000197686.1 2246356..2247093(+) (comL) [Escherichia coli strain Stbl4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=521625 K3830_RS10715 WP_000197686.1 2246356..2247093(+) (comL) [Escherichia coli strain Stbl4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376