Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LPO_RS03285 Genome accession   NC_018139
Coordinates   685930..688137 (-) Length   735 a.a.
NCBI ID   WP_014841114.1    Uniprot ID   A0AAV2UU09
Organism   Legionella pneumophila subsp. pneumophila     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680930..693137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS03265 (LPO_0699) - 681435..683363 (-) 1929 WP_041174110.1 hypothetical protein -
  LPO_RS03270 (LPO_0700) - 683489..683881 (-) 393 WP_010946360.1 hypothetical protein -
  LPO_RS03275 (LPO_0702) - 684018..684395 (+) 378 WP_014841112.1 hypothetical protein -
  LPO_RS03280 (LPO_0703) - 684597..685904 (+) 1308 WP_014841113.1 tetratricopeptide repeat protein -
  LPO_RS03285 (LPO_0704) comEC 685930..688137 (-) 2208 WP_014841114.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPO_RS03290 (LPO_0705) pilE 688215..688664 (-) 450 WP_010946364.1 type IV pilin protein Machinery gene
  LPO_RS03295 (LPO_0706) - 688676..692185 (-) 3510 WP_014841115.1 pilus assembly protein -
  LPO_RS03300 (LPO_0707) - 692198..692710 (-) 513 WP_014841116.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83161.86 Da        Isoelectric Point: 9.8846

>NTDB_id=52116 LPO_RS03285 WP_014841114.1 685930..688137(-) (comEC) [Legionella pneumophila subsp. pneumophila]
MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFRNPGGFNYVRYLAARHIHWTGYIRYGNN
KLISNQPPSFSWLTLREKIGDALTKLAPNTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI
VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAAFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL
FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG
LNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE
YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAGIKL
PASGKINKPTCMQAV

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=52116 LPO_RS03285 WP_014841114.1 685930..688137(-) (comEC) [Legionella pneumophila subsp. pneumophila]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCCTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCAATTGTCCTGTTCTTCATCGCCGGGTGCGGCTTTGCCCTGATTCATCAGTGGATTG
TATCTCCCAAGGGCATGCCTGATACGCAAGTAATCACTCAAGCCCAGTTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACTCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCTTGATCCAATTAAACTG
GTATAACAAACCTCCTGTCTTACGAGCCGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAATTTCCGCA
ACCCAGGAGGTTTTAATTATGTACGTTACCTGGCGGCTCGTCATATCCATTGGACTGGTTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCAACCCCCTTCTTTTAGTTGGTTAACACTGCGTGAAAAAATAGGGGATGCTTTGACAAAACTGGC
ACCGAATACAGAAACGGCAGGCATCATCGAAGCATTGACGTTAAATGTTACTCACCATATCAGTTCAGATCATTGGAATT
TGTTCCGAAGAACAGGAACGATACATTTATTCGGGATTTCAGGAGAGCACATCGCTCTGGTCTCCGGCATTTTCTTTATA
GTAATGAGATGGATTTGGTCAATAAATTATCGATGCTGTTTGTTCTTACCGGCCAATACCATAGCGAGTATCGGTGGGCT
ACTGGCCGCCTTGCCCTATGCTTTTTTAGCTGGGTTTGAGCCTCCTGTACAACGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATAGGAAAACAACGTTTTACACCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG
CCCCATGCCGCATTCCTGCAAGGTTTTTATTTTTCATTTCTTGCCGTGGCCTGTCTTCTGTTGACTCATCAACGCTGGCC
ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGTTGCCTCATTGGATTGATGCCTTTGACTCTCCATTGGTACT
CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTACCCTTGGCTTTA
ATGACCATGATAACGAGTCCATTTCATTGGTCCTGGATATTGATGAAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA
AGGACTAACGTATGTTGAGCAAATAGCAGGGATCAATATCACCTGGTCCATCACCTCGGTAACAATGATGCTCGCTATGA
CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA
TTTCCGCCTCGTACTGCAATTTATCCAGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGACTTGCCGTTGCGAT
ACAAACGCAACATCATGTTTTACTCTACGACACGGGAGATTCCTACTTTCAGGGGAGTGATTTAGGGCAAATGGCGATAA
TCCCCTTTTTCAGGTCAATTGGAATAAAAACAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAGGGCGGA
TTAAATTCCCTTGAAAAAGAGATGAAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG
TCATTCATACCCGCAATGGCAATGGGATGGTGTGAGTTTTCGTTTTTTACCCATCAGGGAATCTTTCAATAAAAAAAATA
ACAATTCTTGTATCTTACAGGTAAGTAATTCGGCTGGCAGGGTTTTGTTAACGGGAGATATTGAAAAAGCAGCTGAGGAG
TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC
CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCCTTAGGATTTGATAATCGCTTCAAATTTCCACATT
CTAAAACTTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGGAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGTATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-158)

Competence protein (Competence)

(199-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

99.048

100

0.99
  comEC Legionella pneumophila strain ERS1305867

97.275

99.864

0.971

Multiple sequence alignment