Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JMO16_RS08485 Genome accession   NZ_CP080566
Coordinates   1720036..1720722 (-) Length   228 a.a.
NCBI ID   WP_220360753.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL20835 isolate HL20835     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1715036..1725722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO16_RS08465 (JMO16_08465) - 1715945..1716484 (-) 540 Protein_1675 ComEC/Rec2 family competence protein -
  JMO16_RS08470 (JMO16_08470) - 1716583..1717755 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  JMO16_RS08475 (JMO16_08475) - 1717808..1719478 (-) 1671 Protein_1677 ComEC/Rec2 family competence protein -
  JMO16_RS08480 (JMO16_08480) - 1719483..1719944 (-) 462 WP_000439693.1 ComE operon protein 2 -
  JMO16_RS08485 (JMO16_08485) comEA 1720036..1720722 (-) 687 WP_220360753.1 ComEA family DNA-binding protein Machinery gene
  JMO16_RS08490 (JMO16_08490) - 1720825..1722144 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  JMO16_RS08495 (JMO16_08495) - 1722282..1722998 (-) 717 WP_000084830.1 class I SAM-dependent methyltransferase -
  JMO16_RS08500 (JMO16_08500) rsfS 1723001..1723354 (-) 354 WP_001088020.1 ribosome silencing factor -
  JMO16_RS08505 (JMO16_08505) yqeK 1723355..1723939 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JMO16_RS08510 (JMO16_08510) nadD 1723929..1724498 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JMO16_RS08515 (JMO16_08515) yhbY 1724501..1724791 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  JMO16_RS08520 (JMO16_08520) aroE 1724795..1725601 (-) 807 WP_000666757.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25882.50 Da        Isoelectric Point: 9.3576

>NTDB_id=521075 JMO16_RS08485 WP_220360753.1 1720036..1720722(-) (comEA) [Staphylococcus aureus strain HL20835 isolate HL20835]
MKDEEPFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=521075 JMO16_RS08485 WP_220360753.1 1720036..1720722(-) (comEA) [Staphylococcus aureus strain HL20835 isolate HL20835]
ATAAAAGATGAAGAACCATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

97.368

0.974
  comEA Staphylococcus aureus MW2

97.297

97.368

0.947