Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   JE032_RS02170 Genome accession   NZ_CP066546
Coordinates   457575..457982 (-) Length   135 a.a.
NCBI ID   WP_009051308.1    Uniprot ID   A0AB33WTM4
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 452575..462982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JE032_RS02155 - 454454..456517 (-) 2064 WP_009051306.1 methyl-accepting chemotaxis protein -
  JE032_RS02160 - 456615..457154 (-) 540 WP_016704857.1 chemotaxis protein CheW -
  JE032_RS02165 pilH 457166..457531 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  JE032_RS02170 pilG 457575..457982 (-) 408 WP_009051308.1 twitching motility response regulator PilG Regulator
  JE032_RS02175 gshB 458219..459193 (+) 975 WP_009051309.1 glutathione synthase -
  JE032_RS02180 - 459344..460243 (+) 900 WP_007929970.1 energy transducer TonB -
  JE032_RS02185 - 460468..461037 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  JE032_RS02190 ruvX 461037..461474 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  JE032_RS02195 pyrR 461596..462102 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14755.09 Da        Isoelectric Point: 6.7123

>NTDB_id=520741 JE032_RS02170 WP_009051308.1 457575..457982(-) (pilG) [Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFESLAKIADNHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=520741 JE032_RS02170 WP_009051308.1 457575..457982(-) (pilG) [Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCAGAAACGCTGTT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGTCCCTGGCCAAGATCGCCGACAACCACCCGGACA
TTATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385