Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JEQ22_RS08340 Genome accession   NZ_CP066501
Coordinates   1653009..1653908 (+) Length   299 a.a.
NCBI ID   WP_071181761.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A02     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1648009..1658908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ22_RS08320 (JEQ22_08265) - 1648700..1650403 (+) 1704 WP_237586717.1 glycosyl transferase -
  JEQ22_RS08325 (JEQ22_08270) - 1650400..1650681 (+) 282 WP_014417762.1 FlhB-like flagellar biosynthesis protein -
  JEQ22_RS08330 (JEQ22_08275) sucC 1650856..1652013 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  JEQ22_RS08335 (JEQ22_08280) sucD 1652042..1652944 (+) 903 WP_014417763.1 succinate--CoA ligase subunit alpha -
  JEQ22_RS08340 (JEQ22_08285) dprA 1653009..1653908 (+) 900 WP_071181761.1 DNA-processing protein DprA Machinery gene
  JEQ22_RS08345 (JEQ22_08290) topA 1654090..1656165 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  JEQ22_RS08350 (JEQ22_08295) trmFO 1656230..1657537 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JEQ22_RS08355 (JEQ22_08300) xerC 1657607..1658524 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32850.04 Da        Isoelectric Point: 8.4593

>NTDB_id=520522 JEQ22_RS08340 WP_071181761.1 1653009..1653908(+) (dprA) [Bacillus velezensis strain ID-A02]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKEPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKLGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=520522 JEQ22_RS08340 WP_071181761.1 1653009..1653908(+) (dprA) [Bacillus velezensis strain ID-A02]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGACCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGAACCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAACTCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368