Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JF380_RS10795 Genome accession   NZ_CP066492
Coordinates   2154533..2154928 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain nan_175_F371_ch     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2149533..2159928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF380_RS10770 (JF380_10770) thiE 2150133..2150774 (-) 642 WP_000483156.1 thiamine phosphate synthase -
  JF380_RS10775 (JF380_10775) thiM 2150776..2151567 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  JF380_RS10780 (JF380_10780) thiD 2151551..2152381 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JF380_RS10785 (JF380_10785) tenA 2152374..2153063 (-) 690 WP_000396067.1 thiaminase II -
  JF380_RS10790 (JF380_10790) sceD 2153449..2154144 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  JF380_RS10795 (JF380_10795) ssb 2154533..2154928 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  JF380_RS10800 (JF380_10800) - 2155122..2155562 (+) 441 WP_000846746.1 YwpF-like family protein -
  JF380_RS10805 (JF380_10805) fabZ 2155620..2156060 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JF380_RS10810 (JF380_10810) murA 2156094..2157359 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JF380_RS10815 (JF380_10815) - 2157470..2157703 (-) 234 WP_000384523.1 DUF1146 family protein -
  JF380_RS10820 (JF380_10820) - 2157835..2157927 (-) 93 WP_001790611.1 hypothetical protein -
  JF380_RS10825 (JF380_10825) - 2158322..2158726 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=520485 JF380_RS10795 WP_000932694.1 2154533..2154928(-) (ssb) [Staphylococcus aureus strain nan_175_F371_ch]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=520485 JF380_RS10795 WP_000932694.1 2154533..2154928(-) (ssb) [Staphylococcus aureus strain nan_175_F371_ch]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992