Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   JF380_RS07825 Genome accession   NZ_CP066492
Coordinates   1607326..1607823 (-) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain nan_175_F371_ch     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602326..1612823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF380_RS07800 (JF380_07800) gcvPB 1602488..1603960 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  JF380_RS07805 (JF380_07805) gcvPA 1603953..1605299 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JF380_RS07810 (JF380_07810) gcvT 1605319..1606410 (-) 1092 WP_198914049.1 glycine cleavage system aminomethyltransferase GcvT -
  JF380_RS07815 (JF380_07815) - 1606569..1607093 (-) 525 WP_001015119.1 shikimate kinase -
  JF380_RS07820 (JF380_07820) - 1607083..1607229 (-) 147 WP_001789879.1 hypothetical protein -
  JF380_RS07825 (JF380_07825) comGF 1607326..1607823 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  JF380_RS07830 (JF380_07830) comGE 1607741..1608040 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JF380_RS07835 (JF380_07835) comGD 1608027..1608473 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JF380_RS07840 (JF380_07840) comGC 1608451..1608762 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JF380_RS07845 (JF380_07845) comGB 1608776..1609846 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  JF380_RS07850 (JF380_07850) comGA 1609818..1610792 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JF380_RS07855 (JF380_07855) - 1610844..1611467 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JF380_RS07860 (JF380_07860) - 1611464..1611793 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JF380_RS07865 (JF380_07865) - 1611793..1612779 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=520465 JF380_RS07825 WP_029642894.1 1607326..1607823(-) (comGF) [Staphylococcus aureus strain nan_175_F371_ch]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=520465 JF380_RS07825 WP_029642894.1 1607326..1607823(-) (comGF) [Staphylococcus aureus strain nan_175_F371_ch]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976