Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JF380_RS04995 Genome accession   NZ_CP066492
Coordinates   1000398..1001384 (+) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain nan_175_F371_ch     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995398..1006384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF380_RS04970 (JF380_04970) opp4B 995610..996572 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  JF380_RS04975 (JF380_04975) opp4C 996584..997465 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  JF380_RS04980 (JF380_04980) trpS 997507..998496 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  JF380_RS04985 (JF380_04985) spxA 998791..999186 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JF380_RS04990 (JF380_04990) mecA 999558..1000277 (+) 720 WP_001217728.1 adaptor protein MecA -
  JF380_RS04995 (JF380_04995) coiA 1000398..1001384 (+) 987 WP_000959288.1 competence protein CoiA Machinery gene
  JF380_RS05000 (JF380_05000) pepF 1001432..1003240 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  JF380_RS05005 (JF380_05005) yjbH 1003700..1004506 (-) 807 WP_000896696.1 protease adaptor protein YjbH -
  JF380_RS05010 (JF380_05010) - 1004529..1004894 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  JF380_RS05015 (JF380_05015) - 1004998..1005591 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  JF380_RS05020 (JF380_05020) - 1005777..1006124 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=520458 JF380_RS04995 WP_000959288.1 1000398..1001384(+) (coiA) [Staphylococcus aureus strain nan_175_F371_ch]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=520458 JF380_RS04995 WP_000959288.1 1000398..1001384(+) (coiA) [Staphylococcus aureus strain nan_175_F371_ch]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982