Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   YB51_RS04490 Genome accession   NC_022516
Coordinates   906234..908018 (+) Length   594 a.a.
NCBI ID   WP_013730338.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901234..913018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS04465 (YB51_4380) - 901719..901970 (+) 252 WP_002935464.1 phage holin -
  YB51_RS04470 (YB51_4385) ldcB 902321..903076 (+) 756 WP_013730337.1 LD-carboxypeptidase LdcB/DacB -
  YB51_RS04475 (YB51_4390) - 903165..903621 (+) 457 Protein_843 VOC family protein -
  YB51_RS04480 (YB51_4400) - 903644..905254 (-) 1611 WP_022540623.1 hypothetical protein -
  YB51_RS04485 (YB51_4405) - 905251..905994 (-) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  YB51_RS04490 (YB51_4410) uvrC 906234..908018 (+) 1785 WP_013730338.1 excinuclease ABC subunit UvrC Machinery gene
  YB51_RS04495 (YB51_4415) - 908075..908203 (+) 129 WP_002935474.1 DUF4044 domain-containing protein -
  YB51_RS04500 (YB51_4420) obgE 908407..909720 (+) 1314 WP_013730339.1 GTPase ObgE -
  YB51_RS04505 (YB51_4425) - 910093..910257 (+) 165 WP_002935476.1 hypothetical protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68354.47 Da        Isoelectric Point: 8.8016

>NTDB_id=52013 YB51_RS04490 WP_013730338.1 906234..908018(+) (uvrC) [Streptococcus suis YB51]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVAEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLIITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLRQCLAHGDNMPSLSDYDKMVKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKINTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAEKVKESLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=52013 YB51_RS04490 WP_013730338.1 906234..908018(+) (uvrC) [Streptococcus suis YB51]
ATGAACGATTTGATCAAGCATAAATTGGAGTTACTACCAGATAGCCCTGGCTGTTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTACGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCTCTAGTGGCTGAAATTGCCGATTTTGAATTTATCGTGACGGATTCCAACATCGAGGCCCTCTTGCTAGAAATCAAT
CTGATTCAGGAAAACAAGCCACGCTATAACATCATGCTCAAGGATGACAAGTCTTATCCCTTCATCAAGATTACCAAGGA
ACGTCATCCGCGACTAATCATTACTCGGCAGATTAAGAAGGATGGTGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGCGGCAATGTTTGGCTCATGGAGACAATATGCCCAGCCTGTCTGACTATGACAAGATGGTCAAGGAAGT
GGCCCAGTTCTTGACAGGTCATGATGATAAGATTATCAAGGAAGTGCAGGACAAGATGAAGGCAGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATACCGGGATGTCCTCCAATCCATTTCAACCCTGCGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAGAATCGAGATGTCTTTGGCTACTACGTAGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTATAATGATGCGGACGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCCCAGCGTGGCGAGAAGAAGCAACTCATCAATCTGGCAACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTTTTGGAGAAAAATCTGGAGAAGACCTACGGTGCGGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTCGATAACTCCAATATTATGGGGACTAGTCCTGTGTCGGCTATGGTTGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTACAAGATTAATACGGTTGAGGGGCCAGATGATTATGCCTC
TATGCGTGAAGTGCTGCAACGCCGTTATAGTCGGGTCTTGAGGGACGATTTGACACCGCCTGATTTGATTATCATTGACG
GAGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAAACCCACGAATTGCTCTTTGGCAATCCGCTGGAAGTGGTGGAGTTGCCACGTAATTCTCAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCTATTGAGTTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCAAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTTTGATGAAGCATTTCAAGTCCATT
GGCAATATCCAGTCAGCCAGCTTACAAGAAATCGCAGAAGCAGGAGTGCCTTACAAGGTGGCGGAAAAGGTCAAGGAAAG
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

Helix-hairpin-helix domain (HHH_5)

(538-588)

UvrB/uvrC motif (UVR)

(196-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.728

99.832

0.766
  uvrC Streptococcus pneumoniae R6

76.391

99.832

0.763
  uvrC Streptococcus pneumoniae D39

76.391

99.832

0.763

Multiple sequence alignment