Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   K0V03_RS19365 Genome accession   NZ_CP080508
Coordinates   3626852..3627877 (+) Length   341 a.a.
NCBI ID   WP_032725643.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3621852..3632877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS19330 (K0V03_19330) ylbE 3622152..3622391 (+) 240 WP_003232231.1 YlbE-like family protein -
  K0V03_RS19335 (K0V03_19335) ylbF 3622507..3622956 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  K0V03_RS19340 (K0V03_19340) ylbG 3623011..3623283 (+) 273 WP_009967171.1 YlbG family protein -
  K0V03_RS19345 (K0V03_19345) rsmD 3623606..3624160 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K0V03_RS19350 (K0V03_19350) coaD 3624165..3624650 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  K0V03_RS19355 (K0V03_19355) spoVV 3624661..3625887 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  K0V03_RS19360 (K0V03_19360) ylbK 3626068..3626850 (+) 783 WP_003232221.1 patatin family protein -
  K0V03_RS19365 (K0V03_19365) sepM 3626852..3627877 (+) 1026 WP_032725643.1 protease DdcP Regulator
  K0V03_RS19370 (K0V03_19370) tmcAL 3627894..3629141 (-) 1248 WP_085186114.1 nucleotidyltransferase -
  K0V03_RS19375 (K0V03_19375) - 3629138..3629323 (-) 186 WP_003232215.1 hypothetical protein -
  K0V03_RS19380 (K0V03_19380) ylbN 3629351..3629869 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  K0V03_RS19385 (K0V03_19385) rpmF 3629891..3630070 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  K0V03_RS19390 (K0V03_19390) gerR 3630216..3630797 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  K0V03_RS19395 (K0V03_19395) ylbP 3630854..3631336 (-) 483 WP_014476736.1 N-acetyltransferase -
  K0V03_RS19400 (K0V03_19400) panEA 3631496..3632392 (+) 897 WP_085186112.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37663.29 Da        Isoelectric Point: 6.5347

>NTDB_id=520086 K0V03_RS19365 WP_032725643.1 3626852..3627877(+) (sepM) [Bacillus subtilis strain HD15]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVILTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=520086 K0V03_RS19365 WP_032725643.1 3626852..3627877(+) (sepM) [Bacillus subtilis strain HD15]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCATCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-194)

Peptidase family M50 (Peptidase_M50)

(59-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.571

100

0.396